Miyakogusa Predicted Gene

Lj3g3v0126190.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr3

Full length sequence(45610869 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL C6TKA5_SOYBN 168 56.2 64.2 (tr|C6TKA5) Putative uncharacterized protein OS=Glycine max PE=2 SV=1

TAIR_pep AT3G08880.1 74.7 29.8 47.2 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01570.1); Has 177 Blast hits to 175 proteins in 60 species: Archae - 4; Bacteria - 33; Metazoa - 18; Fungi - 11; Plants - 59; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). | chr3:2703169-2704165 FORWARD LENGTH=201

Medicago Medtr1g100900.1 143 51.5 63.2 | hypothetical protein | HC | chr1:45305077-45301134 | 20130731

Soybean Glyma18g43590.1 88.6 57.1 65.5

LJGI gnl|LJGI|TC60016 896 98.1 98.1 similar to UniRef100_A7QKV0 Cluster: Chromosome chr8 scaffold_115, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_115, whole genome shotgun sequence - Vitis vinifera (Grape), partial (36%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj3g3v0126190.1 length: 162 aa.

no_ID

method AccNumber shortName E-value location

Coil coil coiled-coil NA 51-137

Seg seg seg NA 40-53
84-105

Wolf-PSORT

Lj3g3v0126190.1 nucl 9.5, nucl_plas 6.33333, cyto_nucl 6.16667, extr 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj3g3v0126190.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	C6TKA5_SOYBN	168	56.2	64.2	(tr\|C6TKA5) Putative uncharacterized protein OS=Glycine max PE=2 SV=1
TAIR_pep	AT3G08880.1	74.7	29.8	47.2	\| Symbols: \| unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01570.1); Has 177 Blast hits to 175 proteins in 60 species: Archae - 4; Bacteria - 33; Metazoa - 18; Fungi - 11; Plants - 59; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). \| chr3:2703169-2704165 FORWARD LENGTH=201
Medicago	Medtr1g100900.1	143	51.5	63.2	\| hypothetical protein \| HC \| chr1:45305077-45301134 \| 20130731
Soybean	Glyma18g43590.1	88.6	57.1	65.5
LJGI	gnl\|LJGI\|TC60016	896	98.1	98.1	similar to UniRef100_A7QKV0 Cluster: Chromosome chr8 scaffold_115, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr8 scaffold_115, whole genome shotgun sequence - Vitis vinifera (Grape), partial (36%)

no_ID
Lj3g3v0126190.1				length: 162 aa.
method	AccNumber	shortName	E-value	location
Coil	coil	coiled-coil	NA	51-137
Seg	seg	seg	NA	40-53 84-105