Miyakogusa Predicted Gene
- Lj3g3v0116140.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr3
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7ID03_MEDTR |
630 |
68.2 |
81.1 |
(tr|G7ID03) Histidine decarboxylase OS=Medicago truncatula GN=MTR_1g099020 PE=3 SV=1 |
| TAIR_pep |
AT1G43710.1 |
521 |
58.9 |
76.1 |
| Symbols: emb1075 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr1:16486534-16488298 REVERSE LENGTH=482 |
| Medicago |
Medtr1g099020.1 |
630 |
68.2 |
81.1 |
| serine decarboxylase | HC | chr1:44644069-44639757 | 20130731 |
| Soybean |
Glyma10g37180.1 |
580 |
73.0 |
84.6 |
|
| LJGI |
gnl|LJGI|FS325493 |
1407 |
100.0 |
100.0 |
weakly similar to UniRef100_A7QN02 Cluster: Chromosome undetermined scaffold_129, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_129, whole genome shotgun sequence - Vitis vinifera (Grape), partial (36%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj3g3v0116140.1 |
length: 480 aa. |
| IPR002129 |
Pyridoxal phosphate-dependent decarboxylase |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0016831 |
carboxy-lyase activity |
|
|
| Biological Process |
GO:0019752 |
carboxylic acid metabolic process |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| HMMPfam |
PF00282 |
Pyridoxal_deC |
6.5e-22 |
117-367 |
| IPR015421 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| Gene3D |
G3DSA:3.40.640.10 |
no description |
2.6e-38 |
117-329 |
| IPR015424 |
Pyridoxal phosphate-dependent transferase |
| superfamily |
SSF53383 |
PLP-dependent |
1e-67 |
78-423 |
| IPR021115 |
Pyridoxal-phosphate binding site |
| Molecular Function |
GO:0016831 |
carboxy-lyase activity |
|
|
| PatternScan |
PS00392 |
DDC_GAD_HDC_YDC |
NA |
280-301 |
| no_ID |
|
| HMMPanther |
PTHR11999 |
GROUP |
2.3e-176 |
119-472 |
| HMMPanther |
PTHR11999:SF4 |
GROUP |
2.3e-176 |
119-472 |
- Wolf-PSORT
Lj3g3v0116140.1 cyto 7, pero 2, nucl 1, mito 1, vacu 1, golg 1, cysk_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj3g3v0116140.1 |
|