Miyakogusa Predicted Gene

Lj3g3v0075800.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr3

Full length sequence(45610869 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL C6T923_SOYBN 697 78.7 84.2 (tr|C6T923) Uncharacterized protein OS=Glycine max PE=2 SV=1

TAIR_pep AT1G80210.1 499 62.0 74.5 | Symbols: BRCC36A, AtBRCC36A | Mov34/MPN/PAD-1 family protein | chr1:30163357-30165628 REVERSE LENGTH=406

Medicago Medtr2g103110.1 676 78.0 82.2 | Mov34/MPN/PAD-1 family protein | HC | chr2:44442391-44447886 | 20130731

Soybean Glyma15g01310.1 697 78.7 84.2

LJGI gnl|LJGI|FS339287 1049 99.8 99.8 similar to UniRef100_Q8RY58 Cluster: AT3g06820/F3E22_4; n=1; Arabidopsis thaliana|Rep: AT3g06820/F3E22_4 - Arabidopsis thaliana (Mouse-ear cress), partial (38%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj3g3v0075800.1 length: 432 aa.

IPR000555 JAB1/Mov34/MPN/PAD-1

method AccNumber shortName E-value location

Molecular Function GO:0005515 protein binding

HMMPfam PF01398 JAB 8.7e-26 3-120

HMMSmart SM00232 JAB/MPN 1.2e-16 5-151

no_ID

Coil coil coiled-coil NA 356-384

Gene3D G3DSA:3.40.140.10 no description 1.4e-09 6-136

HMMPanther PTHR10410 EUKARYOTIC 1.4e-75 1-406

HMMPanther PTHR10410:SF2 BRCA1/BRCA2-CONTAINING 1.4e-75 1-406

Seg seg seg NA 168-187
200-216

superfamily SSF102712 JAB1/MPN 7.4e-15 3-143

Wolf-PSORT

Lj3g3v0075800.1 nucl 11, chlo 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj3g3v0075800.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	C6T923_SOYBN	697	78.7	84.2	(tr\|C6T923) Uncharacterized protein OS=Glycine max PE=2 SV=1
TAIR_pep	AT1G80210.1	499	62.0	74.5	\| Symbols: BRCC36A, AtBRCC36A \| Mov34/MPN/PAD-1 family protein \| chr1:30163357-30165628 REVERSE LENGTH=406
Medicago	Medtr2g103110.1	676	78.0	82.2	\| Mov34/MPN/PAD-1 family protein \| HC \| chr2:44442391-44447886 \| 20130731
Soybean	Glyma15g01310.1	697	78.7	84.2
LJGI	gnl\|LJGI\|FS339287	1049	99.8	99.8	similar to UniRef100_Q8RY58 Cluster: AT3g06820/F3E22_4; n=1; Arabidopsis thaliana\|Rep: AT3g06820/F3E22_4 - Arabidopsis thaliana (Mouse-ear cress), partial (38%)

IPR000555	JAB1/Mov34/MPN/PAD-1
Lj3g3v0075800.1				length: 432 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
HMMPfam	PF01398	JAB	8.7e-26	3-120
HMMSmart	SM00232	JAB/MPN	1.2e-16	5-151
no_ID
Coil	coil	coiled-coil	NA	356-384
Gene3D	G3DSA:3.40.140.10	no description	1.4e-09	6-136
HMMPanther	PTHR10410	EUKARYOTIC	1.4e-75	1-406
HMMPanther	PTHR10410:SF2	BRCA1/BRCA2-CONTAINING	1.4e-75	1-406
Seg	seg	seg	NA	168-187 200-216
superfamily	SSF102712	JAB1/MPN	7.4e-15	3-143