Miyakogusa Predicted Gene

Lj3g3v0044270.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL B9RV94_RICCO 835 83.3 86.5 (tr|B9RV94) Signal recognition particle 54 kD protein, putative OS=Ricinus communis GN=RCOM_0901100 PE=3 SV=1
TAIR_pep AT1G48900.1 782 77.5 84.4 | Symbols: | Signal recognition particle, SRP54 subunit protein | chr1:18084972-18087743 REVERSE LENGTH=495
Medicago Medtr4g010050.1 789 79.6 85.2 | signal recognition particle 54 kDa protein | HC | chr4:2207891-2201607 | 20130731
Soybean Glyma08g22820.1 817 81.9 86.1  
LJGI gnl|LJGI|TC72150 1019 99.8 99.8 homologue to UniRef100_A7QIK3 Cluster: Chromosome chr9 scaffold_104, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr9 scaffold_104, whole genome shotgun sequence - Vitis vinifera (Grape), partial (35%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v0044270.1 length: 478 aa.
IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain
method AccNumber shortName E-value location
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006614 SRP-dependent cotranslational protein targeting to membrane    
HMMPfam PF00448 SRP54 4.1e-76 102-296
HMMSmart SM00962 SRP54-type 5.1e-94 101-296
PatternScan PS00300 SRP54 NA 269-282
IPR003593 AAA+ ATPase domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 ATPases 0.00028 100-277
IPR004125 Signal recognition particle, SRP54 subunit, M-domain
Biological Process GO:0006614 SRP-dependent cotranslational protein targeting to membrane    
Molecular Function GO:0008312 7S RNA binding    
Cellular Component GO:0048500 signal recognition particle    
Gene3D G3DSA:1.10.260.30 no description 1.8e-31 327-429
HMMPfam PF02978 SRP_SPB 4.5e-28 327-429
superfamily SSF47446 Signal 2.5e-38 298-434
IPR006325 Signal recognition particle, SRP54 subunit, eukaryotic
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006614 SRP-dependent cotranslational protein targeting to membrane    
Molecular Function GO:0008312 7S RNA binding    
Cellular Component GO:0048500 signal recognition particle    
HMMTigr TIGR01425 SRP54_euk: 1.1e-225 2-428
IPR013822 Signal recognition particle, SRP54 subunit, helical bundle
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006614 SRP-dependent cotranslational protein targeting to membrane    
HMMPfam PF02881 SRP54_N 8.2e-14 6-83
HMMSmart SM00963 SRP54-type 1.6e-11 2-87
superfamily SSF47364 Domain 1.6e-21 1-95
IPR022941 Signal recognition particle, SRP54 subunit
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006614 SRP-dependent cotranslational protein targeting to membrane    
Cellular Component GO:0048500 signal recognition particle    
HAMAP MF_00306 SRP54 35.351 6-448
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.1e-52 93-298
no_ID  
Gene3D G3DSA:1.20.120.140 no description 1.6e-20 5-90
Gene3D G3DSA:3.40.50.300 no description 1.4e-69 95-297
HMMPanther PTHR11564 GTPASE 2.4e-278 1-438
HMMPanther PTHR11564:SF5 SIGNAL 2.4e-278 1-438
Seg seg seg NA 227-238
294-305
Wolf-PSORT
Lj3g3v0044270.1	cyto 12, chlo 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v0044270.1