Miyakogusa Predicted Gene

Lj3g3v0044100.2

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr3

Full length sequence(45610869 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1KGY2_SOYBN 363 70.6 79.6 (tr|I1KGY2) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT1G15740.1 314 60.0 73.0 | Symbols: | Leucine-rich repeat family protein | chr1:5411509-5414544 FORWARD LENGTH=585

Medicago Medtr4g116170.1 276 54.6 69.1 | F-box/LRR-like protein | HC | chr4:48044473-48055979 | 20130731

Soybean Glyma07g03200.1 363 70.6 79.6

LJGI gnl|LJGI|GO006992 981 99.6 99.6 weakly similar to UniRef100_Q9LMR0 Cluster: F7H2.8 protein; n=1; Arabidopsis thaliana|Rep: F7H2.8 protein - Arabidopsis thaliana (Mouse-ear cress), partial (26%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj3g3v0044100.2 length: 273 aa.

IPR006553 Leucine-rich repeat, cysteine-containing subtype

method AccNumber shortName E-value location

HMMSmart SM00367 Leucine-rich 7.7 90-115
164-189
237-261

no_ID

Gene3D G3DSA:3.80.10.10 no description 1.8e-39 6-270

HMMPanther PTHR23125 F-BOX/LEUCINE 2.1e-81 4-272

HMMPanther PTHR23125:SF154SUBFAMILY NOT 2.1e-81 4-272

HMMPfam PF13516 LRR_6 0.012 90-113
115-138
237-259

HMMPfam PF13855 LRR_8 1.8e-07 165-224

Seg seg seg NA 210-221

superfamily SSF52047 RNI-like 5.1e-35 55-272

Wolf-PSORT

Lj3g3v0044100.2 chlo 11, extr 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj3g3v0044100.2

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1KGY2_SOYBN	363	70.6	79.6	(tr\|I1KGY2) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT1G15740.1	314	60.0	73.0	\| Symbols: \| Leucine-rich repeat family protein \| chr1:5411509-5414544 FORWARD LENGTH=585
Medicago	Medtr4g116170.1	276	54.6	69.1	\| F-box/LRR-like protein \| HC \| chr4:48044473-48055979 \| 20130731
Soybean	Glyma07g03200.1	363	70.6	79.6
LJGI	gnl\|LJGI\|GO006992	981	99.6	99.6	weakly similar to UniRef100_Q9LMR0 Cluster: F7H2.8 protein; n=1; Arabidopsis thaliana\|Rep: F7H2.8 protein - Arabidopsis thaliana (Mouse-ear cress), partial (26%)

IPR006553	Leucine-rich repeat, cysteine-containing subtype
Lj3g3v0044100.2				length: 273 aa.
method	AccNumber	shortName	E-value	location
HMMSmart	SM00367	Leucine-rich	7.7	90-115 164-189 237-261
no_ID
Gene3D	G3DSA:3.80.10.10	no description	1.8e-39	6-270
HMMPanther	PTHR23125	F-BOX/LEUCINE	2.1e-81	4-272
HMMPanther	PTHR23125:SF154SUBFAMILY	NOT	2.1e-81	4-272
HMMPfam	PF13516	LRR_6	0.012	90-113 115-138 237-259
HMMPfam	PF13855	LRR_8	1.8e-07	165-224
Seg	seg	seg	NA	210-221
superfamily	SSF52047	RNI-like	5.1e-35	55-272