Miyakogusa Predicted Gene
- Lj3g3v0028570.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr3
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7KZB4_SOYBN |
189 |
48.0 |
65.9 |
(tr|K7KZB4) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT2G22760.1 |
130 |
40.0 |
66.9 |
| Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:9678012-9679165 FORWARD LENGTH=295 |
| Medicago |
Medtr4g009540.1 |
162 |
48.1 |
65.9 |
| helix loop helix DNA-binding domain protein | HC | chr4:1841959-1840252 | 20130731 |
| Soybean |
Glyma07g03050.1 |
187 |
53.2 |
73.1 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj3g3v0028570.1 |
length: 277 aa. |
| IPR011598 |
Myc-type, basic helix-loop-helix (bHLH) domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0046983 |
protein dimerization activity |
|
|
| Gene3D |
G3DSA:4.10.280.10 |
no description |
3.2e-14 |
95-150 |
| HMMPfam |
PF00010 |
HLH |
8.6e-09 |
95-140 |
| HMMSmart |
SM00353 |
helix |
4.9e-12 |
96-145 |
| ProfileScan |
PS50888 |
BHLH |
13.573 |
90-139 |
| superfamily |
SSF47459 |
HLH, |
4.3e-14 |
88-172 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
129-157 |
| HMMPanther |
PTHR23042 |
CIRCADIAN |
4.1e-16 |
78-276 |
| HMMPanther |
PTHR23042:SF23 |
SUBFAMILY |
4.1e-16 |
78-276 |
| Seg |
seg |
seg |
NA |
78-91 |
- Wolf-PSORT
Lj3g3v0028570.1 nucl 11, chlo 1, pero 1, golg 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj3g3v0028570.1 |
|