Miyakogusa Predicted Gene
- Lj2g3v3341890.3
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7KBS7_SOYBN |
590 |
67.1 |
73.1 |
(tr|K7KBS7) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT5G60580.3 |
281 |
41.7 |
55.6 |
| Symbols: | RING/U-box superfamily protein | chr5:24354298-24356706 FORWARD LENGTH=487 |
| Medicago |
Medtr3g081490.1 |
466 |
59.9 |
68.8 |
| zinc finger protein | HC | chr3:36898911-36894526 | 20130731 |
| Soybean |
Glyma14g00560.1 |
588 |
66.8 |
72.9 |
|
| LJGI |
gnl|LJGI|FS324695 |
1178 |
99.8 |
99.8 |
weakly similar to UniRef100_A7PJQ4 Cluster: Chromosome chr12 scaffold_18, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_18, whole genome shotgun sequence - Vitis vinifera (Grape), partial (6%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v3341890.3 |
length: 441 aa. |
| IPR011016 |
Zinc finger, RING-CH-type |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0008270 |
zinc ion binding |
|
|
| HMMPfam |
PF12906 |
RINGv |
1.3e-12 |
253-300 |
| HMMSmart |
SM00744 |
The |
6e-20 |
252-301 |
| ProfileScan |
PS51292 |
ZF_RING_CH |
19.725 |
245-307 |
| IPR013083 |
Zinc finger, RING/FYVE/PHD-type |
| Gene3D |
G3DSA:3.30.40.10 |
no description |
9.4e-17 |
247-304 |
| no_ID |
|
| HMMPanther |
PTHR23012 |
MEMBRANE |
5.8e-121 |
51-433 |
| HMMPanther |
PTHR23012:SF25 |
PREDICTED |
5.8e-121 |
51-433 |
| Seg |
seg |
seg |
NA |
68-82 |
| superfamily |
SSF57850 |
RING/U-box |
1.1e-13 |
245-307 |
- Wolf-PSORT
Lj2g3v3341890.3 plas 8, cyto 2, nucl 1, vacu 1, E.R. 1, golg 1, E.R._vacu 1, cyto_pero 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v3341890.3 |
|