Miyakogusa Predicted Gene
- Lj2g3v3339750.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1JJU7_SOYBN |
313 |
90.1 |
92.4 |
(tr|I1JJU7) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT4G12650.1 |
285 |
85.5 |
90.1 |
| Symbols: | Endomembrane protein 70 protein family | chr4:7468207-7470165 REVERSE LENGTH=652 |
| Medicago |
Medtr5g098730.1 |
311 |
89.5 |
92.4 |
| transmembrane 9 family protein | HC | chr5:43220823-43218097 | 20130731 |
| Soybean |
Glyma02g47950.1 |
313 |
90.1 |
92.4 |
|
| LJGI |
gnl|LJGI|GO024943 |
1021 |
99.8 |
99.8 |
homologue to UniRef100_A7Q2V0 Cluster: Chromosome chr12 scaffold_47, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_47, whole genome shotgun sequence - Vitis vinifera (Grape), partial (27%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v3339750.1 |
length: 172 aa. |
| IPR004240 |
Nonaspanin (TM9SF) |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0016021 |
integral to membrane |
|
|
| HMMPanther |
PTHR10766 |
TRANSMEMBRANE |
2.1e-99 |
1-172 |
| HMMPfam |
PF02990 |
EMP70 |
5.5e-53 |
2-124 |
| no_ID |
|
| HMMPanther |
PTHR10766:SF1 |
TRANSMEMBRANE |
2.1e-99 |
1-172 |
| Seg |
seg |
seg |
NA |
66-76 |
- Wolf-PSORT
Lj2g3v3339750.1 nucl 5.5, cyto_nucl 5, cyto 3.5, plas 2, E.R. 2, E.R._plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v3339750.1 |
|