Miyakogusa Predicted Gene
- Lj2g3v3339160.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1M679_SOYBN |
1712 |
84.0 |
91.4 |
(tr|I1M679) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
| TAIR_pep |
AT1G80680.1 |
1185 |
60.0 |
74.4 |
| Symbols: SAR3, MOS3, PRE, NUP96 | SUPPRESSOR OF AUXIN RESISTANCE 3 | chr1:30324219-30328489 FORWARD LENGTH=1046 |
| Medicago |
Medtr5g097890.1 |
1601 |
80.5 |
88.8 |
| suppressor OF AUXIN resistance protein | HC | chr5:42866732-42873895 | 20130731 |
| Soybean |
Glyma14g00880.1 |
1684 |
85.3 |
92.4 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v3339160.1 |
length: 962 aa. |
| IPR007230 |
Peptidase S59, nucleoporin |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0005643 |
nuclear pore |
|
|
| Biological Process |
GO:0006810 |
transport |
|
|
| HMMPfam |
PF04096 |
Nucleoporin2 |
8.6e-32 |
42-176 |
| ProfileScan |
PS51434 |
NUP_C |
44.058 |
40-176 |
| superfamily |
SSF82215 |
C-terminal |
2.1e-41 |
31-183 |
| IPR021967 |
Nuclear protein 96 |
| HMMPfam |
PF12110 |
Nup96 |
1.9e-74 |
549-837 |
| no_ID |
|
| Gene3D |
G3DSA:3.30.1610.10 |
no description |
1.1e-41 |
36-182 |
| HMMPanther |
PTHR23198 |
NUCLEOPORIN |
1.6e-240 |
28-959 |
- Wolf-PSORT
Lj2g3v3339160.1 nucl 9, chlo 1, cyto 1, mito 1, plas 1, pero 1, chlo_mito 1, cyto_pero 1, mito_plas 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v3339160.1 |
|