Miyakogusa Predicted Gene

Lj2g3v3337600.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL M4DF86_BRARP 772 59.5 77.4 (tr|M4DF86) Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra015158 PE=4 SV=1
TAIR_pep AT1G08070.1 522 42.2 61.3 | Symbols: OTP82 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2514374-2516599 REVERSE LENGTH=741
Medicago Medtr4g113830.1 508 40.9 60.6 | organelle transcript processing protein, putative | HC | chr4:46849211-46846995 | 20130731
Soybean Glyma05g08420.1 490 40.7 61.4  
LJGI gnl|LJGI|DC593204 731 98.7 98.7 weakly similar to UniRef100_A7PEW9 Cluster: Chromosome chr11 scaffold_13, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr11 scaffold_13, whole genome shotgun sequence - Vitis vinifera (Grape), partial (9%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v3337600.1 length: 608 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.027 170-199
201-231
274-295
304-331
338-364
374-399
440-469
HMMPfam PF12854 PPR_1 4.9e-08 105-134
136-165
HMMPfam PF13041 PPR_2 3.1e-08 4-52
HMMTigr TIGR00756 PPR: 1.5e-05 7-40
80-108
108-136
139-167
170-198
201-234
ProfileScan PS51375 PPR 8.046 5-39
106-140
75-105
40-74
199-233
168-198
141-167
300-334
269-299
371-405
335-365
437-471
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 0.00026 72-215
400-456
no_ID  
HMMPanther PTHR24015 FAMILY 1.9e-275 1-608
HMMPanther PTHR24015:SF169PENTATRICOPEPTIDE (PPR) 1.9e-275 1-608
HMMPfam PF14432 DYW_deaminase 9.4e-14 485-598
ProfileScan PS51257 PROKAR_LIPOPROTEIN 5.000 1-15
Seg seg seg NA 525-542
Wolf-PSORT
Lj2g3v3337600.1	chlo 8, extr 3, nucl 1, plas 1, vacu 1, nucl_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v3337600.1