Miyakogusa Predicted Gene

Lj2g3v3337340.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr2

Full length sequence(43247325 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G7KEM1_MEDTR 196 63.8 73.0 (tr|G7KEM1) F-box protein SNE OS=Medicago truncatula GN=MTR_5g097150 PE=4 SV=1

TAIR_pep AT5G48170.1 119 50.3 61.5 | Symbols: SLY2 | F-box family protein | chr5:19532729-19533202 REVERSE LENGTH=157

Medicago Medtr5g097150.1 196 63.8 73.0 | F-box SNE-like protein | HC | chr5:42533473-42534033 | 20130731

Soybean Glyma02g47500.1 195 66.0 71.2

LJGI gnl|LJGI|BP050712 492 100.0 100.0 homologue to UniRef100_Q6XYB2 Cluster: LP2654; n=1; Homo sapiens|Rep: LP2654 - Homo sapiens (Human), partial (7%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj2g3v3337340.1 length: 159 aa.

IPR001810 F-box domain, cyclin-like

method AccNumber shortName E-value location

Molecular Function GO:0005515 protein binding

HMMSmart SM00256 A 6e-05 21-59

superfamily SSF81383 F-box 7.5e-12 23-73

no_ID

Gene3D G3DSA:1.20.1280.50 no description 1.1e-11 22-72

HMMPanther PTHR22844 F-BOX 3.5e-13 1-68

HMMPanther PTHR22844:SF88 SUBFAMILY 3.5e-13 1-68

HMMPfam PF12937 F-box-like 9.7e-10 22-63

Seg seg seg NA 102-114
130-147

Wolf-PSORT

Lj2g3v3337340.1 chlo 7, nucl 3, mito 3

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj2g3v3337340.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G7KEM1_MEDTR	196	63.8	73.0	(tr\|G7KEM1) F-box protein SNE OS=Medicago truncatula GN=MTR_5g097150 PE=4 SV=1
TAIR_pep	AT5G48170.1	119	50.3	61.5	\| Symbols: SLY2 \| F-box family protein \| chr5:19532729-19533202 REVERSE LENGTH=157
Medicago	Medtr5g097150.1	196	63.8	73.0	\| F-box SNE-like protein \| HC \| chr5:42533473-42534033 \| 20130731
Soybean	Glyma02g47500.1	195	66.0	71.2
LJGI	gnl\|LJGI\|BP050712	492	100.0	100.0	homologue to UniRef100_Q6XYB2 Cluster: LP2654; n=1; Homo sapiens\|Rep: LP2654 - Homo sapiens (Human), partial (7%)

IPR001810	F-box domain, cyclin-like
Lj2g3v3337340.1				length: 159 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
HMMSmart	SM00256	A	6e-05	21-59
superfamily	SSF81383	F-box	7.5e-12	23-73
no_ID
Gene3D	G3DSA:1.20.1280.50	no description	1.1e-11	22-72
HMMPanther	PTHR22844	F-BOX	3.5e-13	1-68
HMMPanther	PTHR22844:SF88	SUBFAMILY	3.5e-13	1-68
HMMPfam	PF12937	F-box-like	9.7e-10	22-63
Seg	seg	seg	NA	102-114 130-147