Miyakogusa Predicted Gene

Lj2g3v3248940.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1M6I7_SOYBN 706 70.0 80.2 (tr|I1M6I7) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT2G05160.1 381 43.4 61.4 | Symbols: | CCCH-type zinc fingerfamily protein with RNA-binding domain | chr2:1859011-1860931 REVERSE LENGTH=536
Medicago Medtr5g094700.1 723 69.6 80.1 | RNA-binding domain CCCH-type zinc finger protein | LC | chr5:41381585-41375614 | 20130731
Soybean Glyma14g01930.1 706 70.0 80.2  
LJGI gnl|LJGI|TC81652 85.7 83.0 83.0 similar to UniRef100_Q6T284 Cluster: Predicted protein; n=1; Populus tremula x Populus alba|Rep: Predicted protein - Populus tremula x Populus alba, partial (35%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v3248940.1 length: 512 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMSmart SM00360 RNA 3.4e-09 334-404
ProfileScan PS50102 RRM 11.588 333-408
IPR000571 Zinc finger, CCCH-type
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS50103 ZF_C3H1 14.802 180-207
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 5.8e-12 324-413
IPR025605 OST-HTH/LOTUS domain
HMMPfam PF12872 OST-HTH 3.9e-09 231-311
ProfileScan PS51644 HTH_OST 10.959 231-315
no_ID  
Coil coil coiled-coil NA 456-477
HMMPanther PTHR24009 FAMILY 3e-121 1-476
HMMPanther PTHR24009:SF0 SUBFAMILY 3e-121 1-476
HMMPfam PF14259 RRM_6 1.4e-09 343-401
Seg seg seg NA 461-478
superfamily SSF54928 RNA-binding 2.2e-13 342-434
superfamily SSF90229 CCCH 8.4e-06 178-206
Wolf-PSORT
Lj2g3v3248940.1	nucl 7, cyto 3, cysk 2, cyto_pero 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v3248940.1