Miyakogusa Predicted Gene
- Lj2g3v3224240.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SKD4_LOTJA |
431 |
100.0 |
100.0 |
(tr|I3SKD4) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT1G16240.2 |
305 |
68.1 |
85.9 |
| Symbols: SYP51, ATSYP51 | syntaxin of plants 51 | chr1:5555183-5556340 REVERSE LENGTH=232 |
| Medicago |
Medtr8g031190.1 |
355 |
82.1 |
90.1 |
| syntaxin of plants protein | HC | chr8:11668474-11663639 | 20130731 |
| Soybean |
Glyma14g02120.1 |
367 |
84.4 |
92.5 |
|
| LJGI |
gnl|LJGI|TC59735 |
1398 |
100.0 |
100.0 |
similar to UniRef100_Q94KK7 Cluster: Syntaxin-52; n=1; Arabidopsis thaliana|Rep: Syntaxin-52 - Arabidopsis thaliana (Mouse-ear cress), complete |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v3224240.1 |
length: 233 aa. |
| IPR000727 |
Target SNARE coiled-coil domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF05739 |
SNARE |
1.2e-11 |
142-202 |
| HMMSmart |
SM00397 |
Helical |
2e-05 |
132-199 |
| ProfileScan |
PS50192 |
T_SNARE |
14.072 |
137-199 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.5.110 |
no description |
8.3e-19 |
137-199 |
| HMMPanther |
PTHR12380 |
SYNTAXIN |
6.7e-130 |
1-229 |
| HMMPanther |
PTHR12380:SF7 |
SYNTAXIN |
6.7e-130 |
1-229 |
| Seg |
seg |
seg |
NA |
213-230 |
- Wolf-PSORT
Lj2g3v3224240.1 golg 5, cyto 3, golg_plas 3, chlo 2, cyto_nucl 2, cyto_E.R. 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v3224240.1 |
|