Miyakogusa Predicted Gene

Lj2g3v3223950.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MP88_SOYBN 989 56.1 65.5 (tr|I1MP88) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT3G11010.1 377 31.9 44.0 | Symbols: AtRLP34, RLP34 | receptor like protein 34 | chr3:3450988-3453672 REVERSE LENGTH=894
Medicago Medtr5g095120.1 980 54.8 65.4 | receptor-like protein | LC | chr5:41569704-41573009 | 20130731
Soybean Glyma16g28480.1 932 54.0 63.0  
LJGI gnl|LJGI|TC63707 753 89.2 89.2 weakly similar to UniRef100_A7QK47 Cluster: Chromosome chr16 scaffold_110, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr16 scaffold_110, whole genome shotgun sequence - Vitis vinifera (Grape), partial (21%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v3223950.1 length: 1062 aa.
IPR001611 Leucine-rich repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00560 LRR_1 0.087 240-259
IPR003591 Leucine-rich repeat, typical subtype
HMMSmart SM00369 Leucine-rich 1.2e+02 115-139
140-164
238-259
286-310
358-381
382-406
430-454
500-524
599-621
670-693
883-906
907-930
931-959
IPR013210 Leucine-rich repeat-containing N-terminal, type 2
HMMPfam PF08263 LRRNT_2 1.1e-09 33-86
IPR025875 Leucine rich repeat 4
HMMPfam PF12799 LRR_4 8.7e-07 719-756
no_ID  
FPrintScan PR00019 LEURICHRPT 2.5e-05 313-326
907-920
Gene3D G3DSA:3.80.10.10 no description 1.6e-27 63-175
178-348
349-559
560-794
863-974
HMMPanther PTHR24420 FAMILY 3.3e-164 96-1035
HMMPanther PTHR24420:SF480SUBFAMILY NOT 3.3e-164 96-1035
HMMPfam PF13516 LRR_6 0.63 142-162
HMMPfam PF13855 LRR_8 7.8e-09 263-323
364-419
647-707
886-944
HMMSmart SM00365 Leucine-rich 42 358-380
382-401
406-435
500-527
622-648
718-733
907-933
Seg seg seg NA 4-15
18-33
206-223
284-298
302-319
379-391
432-444
499-514
528-542
1041-1051
superfamily SSF52047 RNI-like 4.8e-64 94-445
superfamily SSF52058 L 2.8e-16 552-965
414-536
Wolf-PSORT
Lj2g3v3223950.1	vacu 5, plas 4, nucl 2, extr 2, golg_plas 2, cysk_plas 2, mito_plas 2, cyto_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v3223950.1