Miyakogusa Predicted Gene

Lj2g3v3223910.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MP88_SOYBN 855 49.9 58.4 (tr|I1MP88) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT2G33060.1 276 41.9 58.1 | Symbols: AtRLP27, RLP27 | receptor like protein 27 | chr2:14025661-14028087 FORWARD LENGTH=808
Medicago Medtr5g079980.1 774 48.8 56.3 | receptor-like protein | LC | chr5:34230491-34233795 | 20130731
Soybean Glyma16g28520.1 660 52.4 62.6  
LJGI gnl|LJGI|TC63707 1271 98.0 98.0 weakly similar to UniRef100_A7QK47 Cluster: Chromosome chr16 scaffold_110, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr16 scaffold_110, whole genome shotgun sequence - Vitis vinifera (Grape), partial (21%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v3223910.1 length: 1002 aa.
IPR001611 Leucine-rich repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00560 LRR_1 1 239-256
384-404
607-627
ProfileScan PS51450 LRR 5.664 117-137
166-188
193-214
239-262
288-311
312-334
336-357
384-406
360-382
432-453
478-500
456-477
502-523
527-548
553-574
582-604
606-629
630-651
678-701
654-677
702-723
825-844
849-871
873-894
IPR003591 Leucine-rich repeat, typical subtype
HMMSmart SM00369 Leucine-rich 52 115-140
164-190
237-258
310-334
358-381
382-406
430-454
477-500
580-604
628-651
700-723
847-871
IPR013210 Leucine-rich repeat-containing N-terminal, type 2
HMMPfam PF08263 LRRNT_2 1.3e-10 32-86
no_ID  
FPrintScan PR00019 LEURICHRPT 1.5e-05 313-326
580-593
Gene3D G3DSA:3.80.10.10 no description 1.2e-27 69-195
196-338
339-565
566-750
803-914
HMMPanther PTHR24420 FAMILY 3.2e-164 96-975
HMMPanther PTHR24420:SF480SUBFAMILY NOT 3.2e-164 96-975
HMMPfam PF13516 LRR_6 0.059 580-603
HMMPfam PF13855 LRR_8 2.1e-07 311-370
478-537
654-712
826-884
HMMSmart SM00365 Leucine-rich 97 164-193
334-360
406-432
500-527
580-606
676-702
847-873
Seg seg seg NA 4-32
162-173
205-216
251-271
282-303
304-324
351-367
380-391
475-486
499-518
528-542
550-570
981-991
superfamily SSF52047 RNI-like 1.5e-63 302-618
superfamily SSF52058 L 9.8e-50 568-917
28-328
Wolf-PSORT
Lj2g3v3223910.1	plas 6, vacu 3, cysk_plas 3, mito_plas 3, cyto_plas 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v3223910.1