Miyakogusa Predicted Gene

Lj2g3v3151920.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr2

Full length sequence(43247325 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1JJ88_SOYBN 896 74.6 81.5 (tr|I1JJ88) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT1G50660.1 617 55.9 72.6 | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20350.1); Has 21445 Blast hits to 15134 proteins in 1325 species: Archae - 461; Bacteria - 2309; Metazoa - 11052; Fungi - 1737; Plants - 1035; Viruses - 42; Other Eukaryotes - 4809 (source: NCBI BLink). | chr1:18771386-18774385 FORWARD LENGTH=725

Medicago Medtr5g092610.1 834 69.9 78.7 | hypothetical protein | HC | chr5:40453481-40448763 | 20130731

Soybean Glyma02g46010.1 896 74.6 81.5

LJGI gnl|LJGI|AV419628 753 100.0 100.0 weakly similar to UniRef100_A7P0R0 Cluster: Chromosome chr19 scaffold_4, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr19 scaffold_4, whole genome shotgun sequence - Vitis vinifera (Grape), partial (15%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj2g3v3151920.1 length: 638 aa.

no_ID

method AccNumber shortName E-value location

Coil coil coiled-coil NA 224-259
334-369

HMMPanther PTHR31071 FAMILY 1.9e-77 6-623

Seg seg seg NA 34-53
128-141

Wolf-PSORT

Lj2g3v3151920.1 nucl 11.5, cyto_nucl 6.5, chlo 1, mito_plas 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj2g3v3151920.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1JJ88_SOYBN	896	74.6	81.5	(tr\|I1JJ88) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT1G50660.1	617	55.9	72.6	\| Symbols: \| unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20350.1); Has 21445 Blast hits to 15134 proteins in 1325 species: Archae - 461; Bacteria - 2309; Metazoa - 11052; Fungi - 1737; Plants - 1035; Viruses - 42; Other Eukaryotes - 4809 (source: NCBI BLink). \| chr1:18771386-18774385 FORWARD LENGTH=725
Medicago	Medtr5g092610.1	834	69.9	78.7	\| hypothetical protein \| HC \| chr5:40453481-40448763 \| 20130731
Soybean	Glyma02g46010.1	896	74.6	81.5
LJGI	gnl\|LJGI\|AV419628	753	100.0	100.0	weakly similar to UniRef100_A7P0R0 Cluster: Chromosome chr19 scaffold_4, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr19 scaffold_4, whole genome shotgun sequence - Vitis vinifera (Grape), partial (15%)

no_ID
Lj2g3v3151920.1				length: 638 aa.
method	AccNumber	shortName	E-value	location
Coil	coil	coiled-coil	NA	224-259 334-369
HMMPanther	PTHR31071	FAMILY	1.9e-77	6-623
Seg	seg	seg	NA	34-53 128-141