Miyakogusa Predicted Gene

Lj2g3v3106340.2

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr2

Full length sequence(43247325 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G7KAM6_MEDTR 611 65.2 70.0 (tr|G7KAM6) Pre-mRNA-splicing factor CLF1 OS=Medicago truncatula GN=MTR_5g009520 PE=4 SV=1

TAIR_pep AT5G41770.1 557 59.7 67.3 | Symbols: | crooked neck protein, putative / cell cycle protein, putative | chr5:16718021-16720936 FORWARD LENGTH=705

Medicago Medtr5g009520.1 611 65.2 70.0 | cell cycle control protein crooked neck protein, putative | HC | chr5:2293863-2287427 | 20130731

Soybean Glyma11g02100.1 609 65.0 70.4

LJGI gnl|LJGI|TC66986 735 99.2 99.2 similar to UniRef100_Q8GTX9 Cluster: Cell cycle control crn (Crooked neck) protein-like; n=1; Arabidopsis thaliana|Rep: Cell cycle control crn (Crooked neck) protein-like - Arabidopsis thaliana (Mouse-ear cress), partial (44%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj2g3v3106340.2 length: 414 aa.

IPR003107 RNA-processing protein, HAT helix

method AccNumber shortName E-value location

Cellular Component GO:0005622 intracellular

Biological Process GO:0006396 RNA processing

HMMSmart SM00386 HAT 1.9e+02 71-103
105-137
139-171
173-208
210-244
254-286
316-352
354-385
387-414

IPR008847 Suppressor of forked

Cellular Component GO:0005634 nucleus

Biological Process GO:0006397 mRNA processing

HMMPfam PF05843 Suf 3.4e-05 93-210

IPR011990 Tetratricopeptide-like helical

Molecular Function GO:0005515 protein binding

Gene3D G3DSA:1.25.40.10 no description 3.1e-06 93-227
313-414

IPR013026 Tetratricopeptide repeat-containing domain

Molecular Function GO:0005515 protein binding

ProfileScan PS50293 TPR_REGION 11.652 91-192

no_ID

HMMPanther PTHR11246 PRE-MRNA 3.8e-208 18-414

HMMPanther PTHR11246:SF3 CROOKED 3.8e-208 18-414

Seg seg seg NA 41-57

superfamily SSF48452 TPR-like 0.00015 78-214
300-414

Wolf-PSORT

Lj2g3v3106340.2 cyto 9, nucl 2, mito 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj2g3v3106340.2 Not targeted -38.463 -0.636 -3.161 49.78% -34.666

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G7KAM6_MEDTR	611	65.2	70.0	(tr\|G7KAM6) Pre-mRNA-splicing factor CLF1 OS=Medicago truncatula GN=MTR_5g009520 PE=4 SV=1
TAIR_pep	AT5G41770.1	557	59.7	67.3	\| Symbols: \| crooked neck protein, putative / cell cycle protein, putative \| chr5:16718021-16720936 FORWARD LENGTH=705
Medicago	Medtr5g009520.1	611	65.2	70.0	\| cell cycle control protein crooked neck protein, putative \| HC \| chr5:2293863-2287427 \| 20130731
Soybean	Glyma11g02100.1	609	65.0	70.4
LJGI	gnl\|LJGI\|TC66986	735	99.2	99.2	similar to UniRef100_Q8GTX9 Cluster: Cell cycle control crn (Crooked neck) protein-like; n=1; Arabidopsis thaliana\|Rep: Cell cycle control crn (Crooked neck) protein-like - Arabidopsis thaliana (Mouse-ear cress), partial (44%)

IPR003107	RNA-processing protein, HAT helix
Lj2g3v3106340.2				length: 414 aa.
method	AccNumber	shortName	E-value	location
Cellular Component	GO:0005622	intracellular
Biological Process	GO:0006396	RNA processing
HMMSmart	SM00386	HAT	1.9e+02	71-103 105-137 139-171 173-208 210-244 254-286 316-352 354-385 387-414
IPR008847	Suppressor of forked
Cellular Component	GO:0005634	nucleus
Biological Process	GO:0006397	mRNA processing
HMMPfam	PF05843	Suf	3.4e-05	93-210
IPR011990	Tetratricopeptide-like helical
Molecular Function	GO:0005515	protein binding
Gene3D	G3DSA:1.25.40.10	no description	3.1e-06	93-227 313-414
IPR013026	Tetratricopeptide repeat-containing domain
Molecular Function	GO:0005515	protein binding
ProfileScan	PS50293	TPR_REGION	11.652	91-192
no_ID
HMMPanther	PTHR11246	PRE-MRNA	3.8e-208	18-414
HMMPanther	PTHR11246:SF3	CROOKED	3.8e-208	18-414
Seg	seg	seg	NA	41-57
superfamily	SSF48452	TPR-like	0.00015	78-214 300-414