Miyakogusa Predicted Gene

Lj2g3v3072950.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7KB99_SOYBN 1810 78.6 86.0 (tr|K7KB99) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT2G30800.1 1322 60.5 76.2 | Symbols: HVT1, ATVT-1 | helicase in vascular tissue and tapetum | chr2:13120585-13126635 REVERSE LENGTH=1299
Medicago Medtr5g090430.1 1666 71.4 80.3 | ATP-dependent RNA helicase, putative | HC | chr5:39384456-39392519 | 20130731
Soybean Glyma02g45220.1 1419 79.2 86.3  
LJGI gnl|LJGI|TC71694 1499 99.4 99.4 similar to UniRef100_A7PJR9 Cluster: Chromosome chr12 scaffold_18, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_18, whole genome shotgun sequence - Vitis vinifera (Grape), partial (8%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v3072950.1 length: 1173 aa.
IPR001374 Single-stranded nucleic acid binding R3H
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF01424 R3H 1.8e-08 30-80
HMMSmart SM00393 Putative 1.8e-07 4-83
ProfileScan PS51061 R3H 13.928 21-84
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 5.3e-09 579-666
HMMSmart SM00490 helicase 8.7e-13 562-667
ProfileScan PS51194 HELICASE_CTER 13.755 533-707
IPR007502 Helicase-associated domain
Molecular Function GO:0004386 helicase activity    
HMMPfam PF04408 HA2 2e-14 730-823
HMMSmart SM00847 Helicase 3e-16 730-825
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 1e-08 189-346
IPR011709 Domain of unknown function DUF1605
HMMPfam PF07717 OB_NTP_bind 3.9e-09 862-979
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 1.8e-25 179-372
ProfileScan PS51192 HELICASE_ATP_BIND_1 19.456 191-363
IPR020683 Ankyrin repeat-containing domain
Gene3D G3DSA:1.25.40.20 no description 2.7e-09 418-531
ProfileScan PS50297 ANK_REP_REGION 12.381 447-500
superfamily SSF48403 Ankyrin 4.1e-10 414-502
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 6e-32 520-800
190-345
no_ID  
Gene3D G3DSA:3.30.1370.50 no description 6.6e-16 24-82
Gene3D G3DSA:3.40.50.300 no description 4.5e-09 180-346
534-681
HMMPanther PTHR18934 ATP-DEPENDENT 3.2e-295 116-1087
HMMPanther PTHR18934:SF68 SUBFAMILY 3.2e-295 116-1087
Seg seg seg NA 3-11
988-1017
superfamily SSF82708 R3H 9.6e-13 23-84
Wolf-PSORT
Lj2g3v3072950.1	nucl 6, cyto 5, chlo 1, vacu 1, E.R. 1, E.R._vacu 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v3072950.1