Miyakogusa Predicted Gene

Lj2g3v3072940.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1M710_SOYBN 855 83.0 88.8 (tr|I1M710) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G08560.2 617 57.3 72.8 | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:2771104-2773827 REVERSE LENGTH=589
Medicago Medtr5g090420.1 847 81.0 88.5 | transducin/WD40 repeat protein | HC | chr5:39373338-39377755 | 20130731
Soybean Glyma14g03550.2 855 83.0 88.8  
LJGI gnl|LJGI|TC61565 2898 99.1 99.1 weakly similar to UniRef100_A7QNP3 Cluster: Chromosome undetermined scaffold_133, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_133, whole genome shotgun sequence - Vitis vinifera (Grape), partial (82%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v3072940.1 length: 506 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.00018 256-293
301-337
341-379
HMMSmart SM00320 WD40 24 254-293
298-337
340-379
381-421
426-461
ProfileScan PS50082 WD_REPEATS_2 9.038 261-294
305-346
493-506
IPR006594 LisH dimerisation motif
Molecular Function GO:0005515 protein binding    
ProfileScan PS50896 LISH 8.078 62-94
IPR006595 CTLH, C-terminal LisH motif
HMMSmart SM00668 C-terminal 2.5e-05 95-152
ProfileScan PS50897 CTLH 10.072 95-152
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 3.3e-52 255-506
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 30.374 261-506
superfamily SSF50978 WD40 5.3e-48 212-506
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 280-294
366-380
no_ID  
HMMPanther PTHR22838 WD 2e-130 35-506
Seg seg seg NA 15-31
195-206
Wolf-PSORT
Lj2g3v3072940.1	nucl 8, cyto 5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v3072940.1