Miyakogusa Predicted Gene
- Lj2g3v3057350.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
Q2LAH5_SOYBN |
230 |
81.8 |
90.9 |
(tr|Q2LAH5) Polygalacturonase (Precursor) OS=Glycine max GN=PG11 PE=2 SV=1 |
| TAIR_pep |
AT3G07970.1 |
154 |
58.3 |
75.0 |
| Symbols: QRT2 | Pectin lyase-like superfamily protein | chr3:2541006-2543370 FORWARD LENGTH=439 |
| Medicago |
Medtr2g060350.1 |
227 |
80.3 |
90.9 |
| polygalacturonase | HC | chr2:24855141-24858654 | 20130731 |
| Soybean |
Glyma12g01480.1 |
230 |
81.8 |
90.9 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v3057350.1 |
length: 132 aa. |
| IPR000743 |
Glycoside hydrolase, family 28 |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0004650 |
polygalacturonase activity |
|
|
| Biological Process |
GO:0005975 |
carbohydrate metabolic process |
|
|
| HMMPfam |
PF00295 |
Glyco_hydro_28 |
2e-40 |
2-119 |
| IPR011050 |
Pectin lyase fold/virulence factor |
| superfamily |
SSF51126 |
Pectin |
1.3e-38 |
2-131 |
| IPR012334 |
Pectin lyase fold |
| Gene3D |
G3DSA:2.160.20.10 |
no description |
5.9e-40 |
2-130 |
| no_ID |
|
| HMMPanther |
PTHR31375 |
FAMILY |
7.3e-58 |
2-128 |
| HMMPanther |
PTHR31375:SF0 |
SUBFAMILY |
7.3e-58 |
2-128 |
- Wolf-PSORT
Lj2g3v3057350.1 chlo 8, nucl 2, extr 2, cyto 1, mito 1, cysk_nucl 1, nucl_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v3057350.1 |
|