Miyakogusa Predicted Gene

Lj2g3v3055310.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1M739_SOYBN 1281 84.6 86.9 (tr|I1M739) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT5G19420.1 1157 77.0 82.7 | Symbols: | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | chr5:6547945-6552866 REVERSE LENGTH=1105
Medicago Medtr5g089900.1 1286 85.4 87.3 | regulator of chromosome condensation (RCC1) family protein | HC | chr5:39105074-39114126 | 20130731
Soybean Glyma14g03830.1 1271 84.5 86.8  
LJGI gnl|LJGI|TC81682 565 87.0 87.0 similar to UniRef100_A7PQZ5 Cluster: Chromosome chr6 scaffold_25, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_25, whole genome shotgun sequence - Vitis vinifera (Grape), partial (37%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v3055310.1 length: 735 aa.
IPR000306 Zinc finger, FYVE-type
method AccNumber shortName E-value location
Molecular Function GO:0046872 metal ion binding    
HMMPfam PF01363 FYVE 6.6e-14 654-720
HMMSmart SM00064 Protein 2.9e-18 652-721
IPR000408 Regulator of chromosome condensation, RCC1
FPrintScan PR00633 RCCNDNSATION 4.9e-18 311-324
330-346
380-396
421-437
437-451
539-557
597-618
HMMPfam PF00415 RCC1 8e-15 328-376
379-431
434-483
498-546
549-598
603-650
PatternScan PS00626 RCC1_2 NA 314-324
421-431
473-483
ProfileScan PS50012 RCC1_3 14.705 266-327
328-379
380-434
435-486
499-549
550-601
602-653
IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
Gene3D G3DSA:2.130.10.30 no description 5.1e-104 266-654
superfamily SSF50985 RCC1/BLIP-II 9.4e-100 266-657
IPR011011 Zinc finger, FYVE/PHD-type
superfamily SSF57903 FYVE/PHD 5.5e-18 657-725
IPR011993 Pleckstrin homology-like domain
Gene3D G3DSA:2.30.29.30 no description 2.8e-41 17-132
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 2.4e-15 655-725
IPR017455 Zinc finger, FYVE-related
ProfileScan PS50178 ZF_FYVE 11.532 658-720
no_ID  
HMMPanther PTHR22870 REGULATOR 0 36-729
HMMPanther PTHR22870:SF90 REGULATOR 0 36-729
Seg seg seg NA 213-234
245-263
272-283
490-498
688-698
superfamily SSF50729 PH 4.5e-28 17-128
Wolf-PSORT
Lj2g3v3055310.1	nucl 12.5, cyto_nucl 7.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v3055310.1