Miyakogusa Predicted Gene
- Lj2g3v3034040.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SN03_LOTJA |
510 |
90.3 |
90.3 |
(tr|I3SN03) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT2G01620.1 |
167 |
37.2 |
53.0 |
| Symbols: MEE11 | RNI-like superfamily protein | chr2:278204-279226 FORWARD LENGTH=292 |
| Medicago |
Medtr8g104920.1 |
392 |
67.9 |
77.3 |
| F-box SKIP28-like protein | HC | chr8:44233342-44235029 | 20130731 |
| Soybean |
Glyma05g34920.1 |
401 |
70.5 |
78.8 |
|
| LJGI |
gnl|LJGI|TC59531 |
1659 |
100.0 |
100.0 |
weakly similar to UniRef100_A7P3T3 Cluster: Chromosome chr1 scaffold_5, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_5, whole genome shotgun sequence - Vitis vinifera (Grape), partial (59%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v3034040.1 |
length: 277 aa. |
| IPR017900 |
4Fe-4S ferredoxin, iron-sulphur binding, conserved site |
| method |
AccNumber |
shortName |
E-value |
location |
| PatternScan |
PS00198 |
4FE4S_FER_1 |
NA |
194-205 |
| no_ID |
|
| Gene3D |
G3DSA:3.80.10.10 |
no description |
1e-06 |
32-125 |
| HMMPanther |
PTHR23125 |
F-BOX/LEUCINE |
1.9e-31 |
1-247 |
| HMMPanther |
PTHR23125:SF96 |
PUTATIVE |
1.9e-31 |
1-247 |
| Seg |
seg |
seg |
NA |
204-229 |
| superfamily |
SSF52047 |
RNI-like |
6.2e-06 |
35-135 |
- Wolf-PSORT
Lj2g3v3034040.1 cyto 10, mito 2, nucl 1, plas 1, chlo_mito 1, cyto_mito 1, nucl_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v3034040.1 |
|