Miyakogusa Predicted Gene
- Lj2g3v3022810.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SB95_LOTJA |
257 |
100.0 |
100.0 |
(tr|I3SB95) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT5G12190.1 |
232 |
90.2 |
92.7 |
| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:3940731-3941105 REVERSE LENGTH=124 |
| Medicago |
Medtr5g089300.1 |
250 |
98.4 |
98.4 |
| Pre-mRNA branch site p14-like protein | HC | chr5:38804152-38805669 | 20130731 |
| Soybean |
Glyma02g44710.1 |
250 |
98.4 |
98.4 |
|
| LJGI |
gnl|LJGI|TC65177 |
753 |
100.0 |
100.0 |
similar to UniRef100_A9SBS3 Cluster: Predicted protein; n=1; Physcomitrella patens subsp. patens|Rep: Predicted protein - Physcomitrella patens subsp. patens, partial (98%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v3022810.1 |
length: 125 aa. |
| IPR000504 |
RNA recognition motif domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003676 |
nucleic acid binding |
|
|
| HMMPfam |
PF00076 |
RRM_1 |
4e-18 |
21-87 |
| HMMSmart |
SM00360 |
RNA |
9.8e-18 |
20-90 |
| ProfileScan |
PS50102 |
RRM |
16.551 |
19-94 |
| IPR012677 |
Nucleotide-binding, alpha-beta plait |
| Molecular Function |
GO:0000166 |
nucleotide binding |
|
|
| Gene3D |
G3DSA:3.30.70.330 |
no description |
1.8e-20 |
18-107 |
| no_ID |
|
| HMMPanther |
PTHR22630 |
PRE-MRNA |
8.3e-80 |
1-125 |
| HMMPanther |
PTHR22630:SF0 |
SUBFAMILY |
8.3e-80 |
1-125 |
| superfamily |
SSF54928 |
RNA-binding |
3.6e-22 |
2-113 |
- Wolf-PSORT
Lj2g3v3022810.1 chlo 5, mito 4, cyto 3, nucl 2, cyto_mito 2, mito_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v3022810.1 |
|