Miyakogusa Predicted Gene

Lj2g3v3022760.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr2

Full length sequence(43247325 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G7K315_MEDTR 961 88.1 95.7 (tr|G7K315) Dihydropyrimidinase OS=Medicago truncatula GN=MTR_5g089280 PE=4 SV=1

TAIR_pep AT5G12200.1 858 77.2 88.9 | Symbols: PYD2 | pyrimidine 2 | chr5:3941700-3944727 REVERSE LENGTH=531

Medicago Medtr5g089280.1 961 88.1 95.7 | dihydropyrimidinase | HC | chr5:38795231-38800416 | 20130731

Soybean Glyma15g06100.1 948 89.6 94.8

LJGI gnl|LJGI|TC61872 1231 100.0 100.0 similar to UniRef100_A7PFT8 Cluster: Chromosome chr6 scaffold_15, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_15, whole genome shotgun sequence - Vitis vinifera (Grape), partial (58%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj2g3v3022760.1 length: 538 aa.

IPR011059 Metal-dependent hydrolase, composite domain

method AccNumber shortName E-value location

Molecular Function GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

superfamily SSF51338 Composite 1.4e-36 59-513

IPR011778 Hydantoinase/dihydropyrimidinase

Cellular Component GO:0005737 cytoplasm

Biological Process GO:0006208 pyrimidine nucleobase catabolic process

Molecular Function GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides

HMMTigr TIGR02033 D-hydantoinase: 8.9e-194 62-512

no_ID

Gene3D G3DSA:2.30.40.10 no description 2.6e-09 61-127
435-516

Gene3D G3DSA:3.20.20.140 no description 3.8e-111 128-434

HMMPanther PTHR11647 AMINOHYDROLASE 1.8e-279 45-537

HMMPanther PTHR11647:SF1 DIHYDROPYRIMIDINASE 1.8e-279 45-537

HMMPfam PF13147 Amidohydro_4 9.1e-18 104-452

Seg seg seg NA 11-25

superfamily SSF51556 Metallo-dependent 5.4e-96 113-442

Wolf-PSORT

Lj2g3v3022760.1 cyto 4, E.R. 4, cyto_E.R. 4, cysk 3

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj2g3v3022760.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G7K315_MEDTR	961	88.1	95.7	(tr\|G7K315) Dihydropyrimidinase OS=Medicago truncatula GN=MTR_5g089280 PE=4 SV=1
TAIR_pep	AT5G12200.1	858	77.2	88.9	\| Symbols: PYD2 \| pyrimidine 2 \| chr5:3941700-3944727 REVERSE LENGTH=531
Medicago	Medtr5g089280.1	961	88.1	95.7	\| dihydropyrimidinase \| HC \| chr5:38795231-38800416 \| 20130731
Soybean	Glyma15g06100.1	948	89.6	94.8
LJGI	gnl\|LJGI\|TC61872	1231	100.0	100.0	similar to UniRef100_A7PFT8 Cluster: Chromosome chr6 scaffold_15, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr6 scaffold_15, whole genome shotgun sequence - Vitis vinifera (Grape), partial (58%)

IPR011059	Metal-dependent hydrolase, composite domain
Lj2g3v3022760.1				length: 538 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
superfamily	SSF51338	Composite	1.4e-36	59-513
IPR011778	Hydantoinase/dihydropyrimidinase
Cellular Component	GO:0005737	cytoplasm
Biological Process	GO:0006208	pyrimidine nucleobase catabolic process
Molecular Function	GO:0016812	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
HMMTigr	TIGR02033	D-hydantoinase:	8.9e-194	62-512
no_ID
Gene3D	G3DSA:2.30.40.10	no description	2.6e-09	61-127 435-516
Gene3D	G3DSA:3.20.20.140	no description	3.8e-111	128-434
HMMPanther	PTHR11647	AMINOHYDROLASE	1.8e-279	45-537
HMMPanther	PTHR11647:SF1	DIHYDROPYRIMIDINASE	1.8e-279	45-537
HMMPfam	PF13147	Amidohydro_4	9.1e-18	104-452
Seg	seg	seg	NA	11-25
superfamily	SSF51556	Metallo-dependent	5.4e-96	113-442