Miyakogusa Predicted Gene

Lj2g3v2948530.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr2

Full length sequence(43247325 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G7K2W1_MEDTR 674 96.7 98.8 (tr|G7K2W1) T-complex protein 1 subunit eta OS=Medicago truncatula GN=MTR_5g087560 PE=3 SV=1

TAIR_pep AT3G11830.1 632 93.4 97.3 | Symbols: | TCP-1/cpn60 chaperonin family protein | chr3:3732734-3736156 FORWARD LENGTH=557

Medicago Medtr5g087560.1 674 96.7 98.8 | TCP-1/cpn60 chaperonin family protein | HC | chr5:37953566-37962523 | 20130731

Soybean Glyma14g04770.1 673 96.4 98.8

LJGI gnl|LJGI|GO012546 985 99.8 99.8 homologue to UniRef100_Q0DA00 Cluster: Os06g0687700 protein; n=2; Oryza sativa Japonica Group|Rep: Os06g0687700 protein - Oryza sativa subsp. japonica (Rice), partial (53%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj2g3v2948530.1 length: 365 aa.

IPR002423 Chaperonin Cpn60/TCP-1

method AccNumber shortName E-value location

Molecular Function GO:0005524 ATP binding

Biological Process GO:0044267 cellular protein metabolic process

HMMPanther PTHR11353 CHAPERONIN 7.1e-232 1-365

HMMPfam PF00118 Cpn60_TCP1 5.2e-95 1-332

superfamily SSF48592 GroEL 6e-34 179-334

IPR012720 T-complex protein 1, eta subunit

Molecular Function GO:0005524 ATP binding

Biological Process GO:0006457 protein folding

Molecular Function GO:0051082 unfolded protein binding

HMMPanther PTHR11353:SF22 CHAPERONIN 7.1e-232 1-365

IPR017998 Chaperone tailless complex polypeptide 1 (TCP-1)

FPrintScan PR00304 TCOMPLEXTCP1 3.5e-06 178-200
212-224

IPR027409 GroEL-like apical domain

Gene3D G3DSA:3.50.7.10 no description 9e-55 16-178

superfamily SSF52029 GroEL 3.8e-52 18-172

IPR027410 TCP-1-like chaperonin intermediate domain

Gene3D G3DSA:3.30.260.10 no description 7.2e-18 179-198

IPR027413 GroEL-like equatorial domain

Gene3D G3DSA:1.10.560.10 no description 9.2e-38 199-332

no_ID

Seg seg seg NA 335-365

Wolf-PSORT

Lj2g3v2948530.1 cyto 10, chlo 3

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj2g3v2948530.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G7K2W1_MEDTR	674	96.7	98.8	(tr\|G7K2W1) T-complex protein 1 subunit eta OS=Medicago truncatula GN=MTR_5g087560 PE=3 SV=1
TAIR_pep	AT3G11830.1	632	93.4	97.3	\| Symbols: \| TCP-1/cpn60 chaperonin family protein \| chr3:3732734-3736156 FORWARD LENGTH=557
Medicago	Medtr5g087560.1	674	96.7	98.8	\| TCP-1/cpn60 chaperonin family protein \| HC \| chr5:37953566-37962523 \| 20130731
Soybean	Glyma14g04770.1	673	96.4	98.8
LJGI	gnl\|LJGI\|GO012546	985	99.8	99.8	homologue to UniRef100_Q0DA00 Cluster: Os06g0687700 protein; n=2; Oryza sativa Japonica Group\|Rep: Os06g0687700 protein - Oryza sativa subsp. japonica (Rice), partial (53%)

IPR002423	Chaperonin Cpn60/TCP-1
Lj2g3v2948530.1				length: 365 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005524	ATP binding
Biological Process	GO:0044267	cellular protein metabolic process
HMMPanther	PTHR11353	CHAPERONIN	7.1e-232	1-365
HMMPfam	PF00118	Cpn60_TCP1	5.2e-95	1-332
superfamily	SSF48592	GroEL	6e-34	179-334
IPR012720	T-complex protein 1, eta subunit
Molecular Function	GO:0005524	ATP binding
Biological Process	GO:0006457	protein folding
Molecular Function	GO:0051082	unfolded protein binding
HMMPanther	PTHR11353:SF22	CHAPERONIN	7.1e-232	1-365
IPR017998	Chaperone tailless complex polypeptide 1 (TCP-1)
FPrintScan	PR00304	TCOMPLEXTCP1	3.5e-06	178-200 212-224
IPR027409	GroEL-like apical domain
Gene3D	G3DSA:3.50.7.10	no description	9e-55	16-178
superfamily	SSF52029	GroEL	3.8e-52	18-172
IPR027410	TCP-1-like chaperonin intermediate domain
Gene3D	G3DSA:3.30.260.10	no description	7.2e-18	179-198
IPR027413	GroEL-like equatorial domain
Gene3D	G3DSA:1.10.560.10	no description	9.2e-38	199-332
no_ID
Seg	seg	seg	NA	335-365