Miyakogusa Predicted Gene

Lj2g3v2905020.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL B0BLB2_LOTJA 2226 96.5 96.5 (tr|B0BLB2) Ubiquitin carboxyl-terminal hydrolase OS=Lotus japonicus GN=CM0545.290.nc PE=3 SV=1
TAIR_pep AT5G06600.1 1848 79.6 87.3 | Symbols: UBP12 | ubiquitin-specific protease 12 | chr5:2019545-2027834 REVERSE LENGTH=1116
Medicago Medtr5g086700.1 2061 88.9 92.8 | ubiquitin carboxyl-terminal hydrolase-like protein | HC | chr5:37479517-37457082 | 20130731
Soybean Glyma02g43930.1 2109 91.4 94.2  
LJGI gnl|LJGI|TC64948 1528 100.0 100.0 homologue to UniRef100_A7PGA4 Cluster: Chromosome chr6 scaffold_15, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_15, whole genome shotgun sequence - Vitis vinifera (Grape), partial (40%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v2905020.1 length: 1118 aa.
IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2
method AccNumber shortName E-value location
Molecular Function GO:0004221 ubiquitin thiolesterase activity    
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
HMMPfam PF00443 UCH 5.0000000000000135E-54 197-520
ProfileScan PS50235 UCH_2_3 0.0 199-524
IPR002083 MATH
Molecular Function GO:0005515 protein binding    
HMMPfam PF00917 MATH 5.900000000000011E-17 61-179
HMMSmart SM00061 MATH 1.29999924468179E-20 56-160
ProfileScan PS50144 MATH 0.0 54-179
IPR008974 TRAF-like
Molecular Function GO:0005515 protein binding    
superfamily SSF49599 Traf_like 4.199997713395825E-41 51-191
IPR018200 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site
Molecular Function GO:0004221 ubiquitin thiolesterase activity    
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
PatternScan PS00972 UCH_2_1 0.0 200-215
PatternScan PS00973 UCH_2_2 0.0 439-456
IPR024729 Peptidase C19 domain
HMMPfam PF12436 USP7 2.8999999999999995E-9 535-567
no_ID  
Gene3D G3DSA:2.20.210.10G3DSA:2.20.210.10 T[312-384] 1.1999999998684077E-30  
Gene3D G3DSA:2.60.210.10G3DSA:2.60.210.10 T[50-180] 1.5000000001530715E-25  
HMMPanther PTHR24006 PTHR24006 0.0 126-789
HMMPanther PTHR24006:SF89 PTHR24006:SF89 0.0 126-789
superfamily SSF54001 SSF54001 7.699984805336903E-100 193-556
Wolf-PSORT
Lj2g3v2905020.1	nucl 10, cyto 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v2905020.1