Miyakogusa Predicted Gene

Lj2g3v2900220.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7M4X9_SOYBN 487 78.0 81.5 (tr|K7M4X9) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep AT1G62360.1 308 62.9 74.5 | Symbols: STM, BUM1, SHL, WAM1, BUM, WAM | KNOX/ELK homeobox transcription factor | chr1:23058796-23061722 REVERSE LENGTH=382
Medicago Medtr5g085860.1 431 73.5 78.6 | homeobox knotted-like protein | HC | chr5:37100277-37096795 | 20130731
Soybean Glyma14g05150.1 425 79.4 82.4  
LJGI gnl|LJGI|GO011174 597 99.0 99.0 homologue to UniRef100_A5Y4H1 Cluster: Class I KNOX homeobox transcription factor; n=1; Medicago truncatula|Rep: Class I KNOX homeobox transcription factor - Medicago truncatula (Barrel medic), partial (25%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v2900220.1 length: 305 aa.
IPR001356 Homeodomain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
HMMSmart SM00389 Homeodomain 2.8e-12 211-276
ProfileScan PS50071 HOMEOBOX_2 12.228 209-272
IPR005539 ELK
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF03789 ELK 5.7e-10 189-210
ProfileScan PS51213 ELK 11.139 189-209
IPR005540 KNOX1
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF03790 KNOX1 1e-16 57-98
IPR005541 KNOX2
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF03791 KNOX2 4.4e-23 109-157
IPR008422 Homeobox KN domain
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF05920 Homeobox_KN 5.9e-16 229-268
IPR009057 Homeodomain-like
Molecular Function GO:0003677 DNA binding    
Gene3D G3DSA:1.10.10.60 no description 1.9e-27 214-275
superfamily SSF46689 Homeodomain-like 5.4e-18 210-287
IPR017970 Homeobox, conserved site
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
PatternScan PS00027 HOMEOBOX_1 NA 247-270
no_ID  
HMMPanther PTHR11850 HOMEOBOX 3.5e-51 56-272
HMMPanther PTHR11850:SF15 HOMEOBOX 3.5e-51 56-272
Seg seg seg NA 13-25
205-220
Wolf-PSORT
Lj2g3v2900220.1	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v2900220.1