Miyakogusa Predicted Gene

Lj2g3v2856000.2

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr2

Full length sequence(43247325 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1M7K3_SOYBN 822 83.4 93.0 (tr|I1M7K3) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT1G04970.1 622 63.2 82.3 | Symbols: | lipid-binding serum glycoprotein family protein | chr1:1411216-1413431 FORWARD LENGTH=488

Medicago Medtr5g084690.1 741 77.0 90.2 | LBP/BPI/CETP family, carboxy-terminal domain protein | HC | chr5:36538521-36542968 | 20130731

Soybean Glyma14g05590.1 822 83.4 93.0

LJGI gnl|LJGI|GO014784 888 100.0 100.0 similar to UniRef100_A7PXC2 Cluster: Chromosome chr12 scaffold_36, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_36, whole genome shotgun sequence - Vitis vinifera (Grape), partial (27%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj2g3v2856000.2 length: 493 aa.

IPR001124 Lipid-binding serum glycoprotein, C-terminal

method AccNumber shortName E-value location

Molecular Function GO:0008289 lipid binding

HMMPfam PF02886 LBP_BPI_CETP_C 1.7e-24 272-466

HMMSmart SM00329 BPI/LBP/CETP 6.3e-26 277-475

IPR017942 Lipid-binding serum glycoprotein, N-terminal

Molecular Function GO:0008289 lipid binding

HMMPfam PF01273 LBP_BPI_CETP 3.8e-25 37-209

HMMSmart SM00328 BPI/LBP/CETP 0.00023 33-258

IPR017943 Bactericidal permeability-increasing protein, alpha/beta domain

Molecular Function GO:0008289 lipid binding

superfamily SSF55394 Bactericidal 1.9e-36 243-480
25-242

no_ID

Gene3D G3DSA:3.15.10.10 no description 3.1e-36 36-210

Gene3D G3DSA:3.15.20.10 no description 4.9e-72 211-479

HMMPanther PTHR10504 BACTERICIDAL 1.6e-204 29-489

HMMPanther PTHR10504:SF15 LIPID-BINDING 1.6e-204 29-489

Seg seg seg NA 2-15

Wolf-PSORT

Lj2g3v2856000.2 chlo 4, extr 4, nucl 3, vacu 2, cyto_nucl 2, chlo_mito 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj2g3v2856000.2

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1M7K3_SOYBN	822	83.4	93.0	(tr\|I1M7K3) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT1G04970.1	622	63.2	82.3	\| Symbols: \| lipid-binding serum glycoprotein family protein \| chr1:1411216-1413431 FORWARD LENGTH=488
Medicago	Medtr5g084690.1	741	77.0	90.2	\| LBP/BPI/CETP family, carboxy-terminal domain protein \| HC \| chr5:36538521-36542968 \| 20130731
Soybean	Glyma14g05590.1	822	83.4	93.0
LJGI	gnl\|LJGI\|GO014784	888	100.0	100.0	similar to UniRef100_A7PXC2 Cluster: Chromosome chr12 scaffold_36, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr12 scaffold_36, whole genome shotgun sequence - Vitis vinifera (Grape), partial (27%)

IPR001124	Lipid-binding serum glycoprotein, C-terminal
Lj2g3v2856000.2				length: 493 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0008289	lipid binding
HMMPfam	PF02886	LBP_BPI_CETP_C	1.7e-24	272-466
HMMSmart	SM00329	BPI/LBP/CETP	6.3e-26	277-475
IPR017942	Lipid-binding serum glycoprotein, N-terminal
Molecular Function	GO:0008289	lipid binding
HMMPfam	PF01273	LBP_BPI_CETP	3.8e-25	37-209
HMMSmart	SM00328	BPI/LBP/CETP	0.00023	33-258
IPR017943	Bactericidal permeability-increasing protein, alpha/beta domain
Molecular Function	GO:0008289	lipid binding
superfamily	SSF55394	Bactericidal	1.9e-36	243-480 25-242
no_ID
Gene3D	G3DSA:3.15.10.10	no description	3.1e-36	36-210
Gene3D	G3DSA:3.15.20.10	no description	4.9e-72	211-479
HMMPanther	PTHR10504	BACTERICIDAL	1.6e-204	29-489
HMMPanther	PTHR10504:SF15	LIPID-BINDING	1.6e-204	29-489
Seg	seg	seg	NA	2-15