Miyakogusa Predicted Gene

Lj2g3v2659380.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JI29_SOYBN 1250 78.7 85.6 (tr|I1JI29) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G05970.1 846 57.6 70.3 | Symbols: NEDD1 | Transducin/WD40 repeat-like superfamily protein | chr5:1795464-1799313 FORWARD LENGTH=781
Medicago Medtr5g081240.1 1168 73.6 81.9 | transducin/WD-like repeat-protein | HC | chr5:34795701-34804210 | 20130731
Soybean Glyma02g41880.1 1250 78.7 85.6  
LJGI gnl|LJGI|TC58415 1279 99.8 99.8 similar to UniRef100_A7PIM9 Cluster: Chromosome chr13 scaffold_17, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr13 scaffold_17, whole genome shotgun sequence - Vitis vinifera (Grape), partial (28%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v2659380.1 length: 777 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.045 35-61
83-112
HMMSmart SM00320 WD40 0.54 22-62
64-112
115-154
157-198
202-242
245-283
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 1.6e-47 6-308
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 22.966 1-251
superfamily SSF50978 WD40 4.7e-48 7-307
no_ID  
Coil coil coiled-coil NA 749-777
HMMPanther PTHR22847 WD40 6.9e-272 3-777
HMMPanther PTHR22847:SF65 PREDICTED: 6.9e-272 3-777
Seg seg seg NA 341-357
552-566
688-702
Wolf-PSORT
Lj2g3v2659380.1	nucl 10, cyto 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v2659380.1