Miyakogusa Predicted Gene
- Lj2g3v2572170.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
D7TSR3_VITVI |
141 |
51.4 |
69.3 |
(tr|D7TSR3) Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01440 PE=4 SV=1 |
| TAIR_pep |
AT1G09700.1 |
57.8 |
35.8 |
50.9 |
| Symbols: HYL1, DRB1 | dsRNA-binding domain-like superfamily protein | chr1:3137960-3140118 REVERSE LENGTH=419 |
| Medicago |
Medtr4g007820.1 |
135 |
36.4 |
52.9 |
| double-stranded RNA-binding motif protein | HC | chr4:1278710-1274464 | 20130731 |
| Soybean |
Glyma14g07600.1 |
134 |
52.9 |
71.4 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v2572170.1 |
length: 295 aa. |
| IPR001159 |
Double-stranded RNA-binding |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003725 |
double-stranded RNA binding |
|
|
| HMMPfam |
PF00035 |
dsrm |
4.7e-10 |
90-149 |
| HMMSmart |
SM00358 |
Double-stranded |
4.4e-12 |
89-154 |
| IPR014720 |
Double-stranded RNA-binding-like domain |
| Gene3D |
G3DSA:3.30.160.20 |
no description |
1.6e-10 |
90-150 |
| no_ID |
|
| Seg |
seg |
seg |
NA |
202-216 |
| superfamily |
SSF54768 |
dsRNA-binding |
4.2e-12 |
71-189 |
- Wolf-PSORT
Lj2g3v2572170.1 mito 4, chlo 3, nucl 3, cyto 2, cyto_mito 2, cysk_nucl 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v2572170.1 |
|