| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| TrEMBL | Q42461_CANGL | 164 | 55.3 | 62.0 | (tr|Q42461) High mobility group protein OS=Canavalia gladiata PE=2 SV=1 |
| TAIR_pep | AT1G14900.1 | 102 | 62.5 | 79.2 | | Symbols: HMGA | high mobility group A | chr1:5138665-5139353 REVERSE LENGTH=204 |
| Medicago | Medtr5g078330.1 | 145 | 58.7 | 68.5 | | linker histone H1 and h5 family protein | HC | chr5:33480032-33481579 | 20130731 |
| Soybean | Glyma02g41230.2 | 147 | 52.5 | 59.2 | |
| LJGI | gnl|LJGI|TC65867 | 1059 | 100.0 | 100.0 | similar to UniRef100_Q42461 Cluster: High mobility group protein; n=1; Canavalia gladiata|Rep: High mobility group protein - Canavalia gladiata (Sword bean) (Japanese jack bean), partial (94%) |
| Lj2g3v2560000.1 | length: 177 aa. | |||
| IPR000116 | High mobility group, HMG-I/HMG-Y | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Cellular Component | GO:0000785 | chromatin | ||
| Molecular Function | GO:0003677 | DNA binding | ||
| Cellular Component | GO:0005634 | nucleus | ||
| Biological Process | GO:0006355 | regulation of transcription, DNA-dependent | ||
| FPrintScan | PR00930 | HIGHMOBLTYIY | 3.2e-08 | 84-96 108-119 121-140 |
| IPR005818 | Histone H1/H5 | |||
| Cellular Component | GO:0000786 | nucleosome | ||
| Molecular Function | GO:0003677 | DNA binding | ||
| Cellular Component | GO:0005634 | nucleus | ||
| Biological Process | GO:0006334 | nucleosome assembly | ||
| HMMPfam | PF00538 | Linker_histone | 8.3e-15 | 12-73 |
| HMMSmart | SM00526 | Domain | 1.1e-22 | 9-75 |
| ProfileScan | PS51504 | H15 | 24.807 | 11-80 |
| IPR011991 | Winged helix-turn-helix DNA-binding domain | |||
| Gene3D | G3DSA:1.10.10.10 | no description | 1.4e-16 | 8-94 |
| IPR017956 | AT hook, DNA-binding motif | |||
| Molecular Function | GO:0003677 | DNA binding | ||
| HMMPfam | PF02178 | AT_hook | 0.62 | 86-94 108-119 132-142 157-168 |
| HMMSmart | SM00384 | DNA | 1.2 | 86-98 108-120 132-144 157-169 |
| IPR020478 | AT hook-like | |||
| FPrintScan | PR00929 | ATHOOK | 4.1e-16 | 86-96 106-117 130-140 |
| no_ID | ||||
| Seg | seg | seg | NA | 83-98 107-115 141-168 |
| superfamily | SSF46785 | "Winged | 1.7e-19 | 7-94 |
Lj2g3v2560000.1 nucl 13
| entry_id | prediction | score | sppta | spptna | fp | profile |
|---|---|---|---|---|---|---|
| Lj2g3v2560000.1 |