Miyakogusa Predicted Gene

Lj2g3v2558970.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7M8E7_SOYBN 1325 73.4 81.6 (tr|K7M8E7) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G16630.2 694 47.5 61.4 | Symbols: ATRAD4, RAD4 | DNA repair protein Rad4 family | chr5:5455325-5459461 FORWARD LENGTH=865
Medicago Medtr5g078360.1 1350 74.8 82.9 | DNA repair protein complementing xp-C cells-like protein | HC | chr5:33507932-33499444 | 20130731
Soybean Glyma14g39480.1 1130 74.2 81.7  
LJGI gnl|LJGI|TC67291 1384 100.0 100.0 similar to UniRef100_A7PRD5 Cluster: Chromosome chr14 scaffold_26, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_26, whole genome shotgun sequence - Vitis vinifera (Grape), partial (14%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v2558970.1 length: 902 aa.
IPR002931 Transglutaminase-like
method AccNumber shortName E-value location
HMMPfam PF01841 Transglut_core 4.2e-05 199-264
IPR004583 DNA repair protein Rad4
Molecular Function GO:0003684 damaged DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006289 nucleotide-excision repair    
HMMPanther PTHR12135 DNA 1.7e-157 99-902
IPR018325 Rad4/PNGase transglutaminase-like fold
Molecular Function GO:0003684 damaged DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006289 nucleotide-excision repair    
HMMPfam PF03835 Rad4 5.3e-24 418-567
IPR018326 Rad4 beta-hairpin domain 1
Molecular Function GO:0003677 DNA binding    
HMMPfam PF10403 BHD_1 1.5e-14 576-626
HMMSmart SM01030 Rad4 7.6e-19 575-626
IPR018327 Rad4 beta-hairpin domain 2
Molecular Function GO:0003677 DNA binding    
HMMPfam PF10404 BHD_2 1.1e-11 628-691
HMMSmart SM01031 Rad4 8.4e-09 628-691
IPR018328 Rad4 beta-hairpin domain 3
Molecular Function GO:0003677 DNA binding    
HMMPfam PF10405 BHD_3 9.6e-27 698-772
HMMSmart SM01032 Rad4 6e-41 698-772
no_ID  
Coil coil coiled-coil NA 765-793
Seg seg seg NA 176-191
770-789
superfamily SSF54001 Cysteine 6.9e-23 150-585
Wolf-PSORT
Lj2g3v2558970.1	nucl 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v2558970.1