Miyakogusa Predicted Gene
- Lj2g3v2507910.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7KAF9_SOYBN |
766 |
84.8 |
91.7 |
(tr|K7KAF9) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT5G17230.2 |
580 |
68.3 |
80.9 |
| Symbols: PSY | PHYTOENE SYNTHASE | chr5:5659839-5662087 REVERSE LENGTH=422 |
| Medicago |
Medtr5g076620.4 |
750 |
84.8 |
90.6 |
| squalene/phytoene synthase | HC | chr5:32689899-32685852 | 20130731 |
| Soybean |
Glyma02g40720.1 |
766 |
84.8 |
91.7 |
|
| LJGI |
gnl|LJGI|BP042660 |
357 |
100.0 |
100.0 |
similar to UniRef100_A4AHL6 Cluster: Glutamate permease; n=1; marine actinobacterium PHSC20C1|Rep: Glutamate permease - marine actinobacterium PHSC20C1, partial (5%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v2507910.1 |
length: 435 aa. |
| IPR002060 |
Squalene/phytoene synthase |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0009058 |
biosynthetic process |
|
|
| Molecular Function |
GO:0016740 |
transferase activity |
|
|
| HMMPfam |
PF00494 |
SQS_PSY |
1e-76 |
151-408 |
| IPR008949 |
Terpenoid synthase |
| Gene3D |
G3DSA:1.10.600.10 |
no description |
4.5e-131 |
138-424 |
| superfamily |
SSF48576 |
Terpenoid |
3.2e-98 |
140-423 |
| IPR019845 |
Squalene/phytoene synthase, conserved site |
| Molecular Function |
GO:0016765 |
transferase activity, transferring alkyl or aryl (other than methyl) groups |
|
|
| PatternScan |
PS01044 |
SQUALEN_PHYTOEN_SYN_1 |
NA |
260-275 |
| PatternScan |
PS01045 |
SQUALEN_PHYTOEN_SYN_2 |
NA |
296-321 |
| no_ID |
|
| HMMPanther |
PTHR31480 |
FAMILY |
3.7e-139 |
137-432 |
| HMMPanther |
PTHR31480:SF0 |
SUBFAMILY |
3.7e-139 |
137-432 |
- Wolf-PSORT
Lj2g3v2507910.1 chlo 11, nucl 1, cyto 1, extr 1, cyto_nucl 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v2507910.1 |
|