Miyakogusa Predicted Gene
- Lj2g3v2448250.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1MZN6_SOYBN |
603 |
77.7 |
88.6 |
(tr|I1MZN6) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT2G30520.1 |
511 |
65.7 |
82.2 |
| Symbols: RPT2 | Phototropic-responsive NPH3 family protein | chr2:13002920-13005573 REVERSE LENGTH=593 |
| Medicago |
Medtr3g062540.2 |
594 |
77.7 |
88.0 |
| root phototropism-like protein | HC | chr3:28251513-28249139 | 20130731 |
| Soybean |
Glyma18g05720.1 |
603 |
77.7 |
88.6 |
|
| LJGI |
gnl|LJGI|TC59101 |
2129 |
99.7 |
99.7 |
similar to UniRef100_A7NXZ5 Cluster: Chromosome chr6 scaffold_3, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_3, whole genome shotgun sequence - Vitis vinifera (Grape), partial (84%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v2448250.1 |
length: 366 aa. |
| IPR011333 |
BTB/POZ fold |
| method |
AccNumber |
shortName |
E-value |
location |
| Gene3D |
G3DSA:3.30.710.10 |
no description |
4.6e-06 |
2-74 |
| superfamily |
SSF54695 |
POZ |
3.8e-07 |
1-86 |
| IPR027356 |
NPH3 domain |
| HMMPfam |
PF03000 |
NPH3 |
2.4e-66 |
139-364 |
| ProfileScan |
PS51649 |
NPH3 |
56.880 |
139-366 |
| no_ID |
|
| HMMPanther |
PTHR32370 |
FAMILY |
2.2e-137 |
1-364 |
| HMMPanther |
PTHR32370:SF0 |
SUBFAMILY |
2.2e-137 |
1-364 |
- Wolf-PSORT
Lj2g3v2448250.1 E.R. 4, chlo 3, E.R._plas 3, nucl 2, mito 2, plas 2, nucl_plas 2, mito_plas 2, cyto_E.R. 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v2448250.1 |
|