Miyakogusa Predicted Gene
- Lj2g3v2447150.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
B9HDK6_POPTR |
309 |
98.6 |
100.0 |
(tr|B9HDK6) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_561006 PE=3 SV=1 |
| TAIR_pep |
AT5G41700.5 |
304 |
97.3 |
100.0 |
| Symbols: UBC8 | ubiquitin conjugating enzyme 8 | chr5:16676072-16677223 FORWARD LENGTH=148 |
| Medicago |
Medtr5g075580.1 |
306 |
99.3 |
99.3 |
| ubiquitin-conjugating enzyme E2 | HC | chr5:32156931-32151767 | 20130731 |
| Soybean |
Glyma14g38620.1 |
308 |
100.0 |
100.0 |
|
| LJGI |
gnl|LJGI|TC72221 |
886 |
100.0 |
100.0 |
UniRef100_Q06H23 Cluster: Ubiquitin carrier protein; n=2; Papilionoideae|Rep: Ubiquitin carrier protein - Arachis hypogaea (Peanut), complete |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v2447150.1 |
length: 148 aa. |
| IPR000608 |
Ubiquitin-conjugating enzyme, E2 |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0016881 |
acid-amino acid ligase activity |
|
|
| HMMPfam |
PF00179 |
UQ_con |
6.2e-53 |
5-141 |
| ProfileScan |
PS50127 |
UBIQUITIN_CONJUGAT_2 |
48.743 |
4-136 |
| IPR016135 |
Ubiquitin-conjugating enzyme/RWD-like |
| Gene3D |
G3DSA:3.10.110.10 |
no description |
7.1e-82 |
1-147 |
| superfamily |
SSF54495 |
UBC-like |
3.3e-66 |
1-148 |
| IPR023313 |
Ubiquitin-conjugating enzyme, active site |
| PatternScan |
PS00183 |
UBIQUITIN_CONJUGAT_1 |
NA |
74-89 |
| no_ID |
|
| HMMPanther |
PTHR24068 |
FAMILY |
3.1e-116 |
1-147 |
| HMMSmart |
SM00212 |
Ubiquitin-conjugating |
5.5e-81 |
4-147 |
- Wolf-PSORT
Lj2g3v2447150.1 mito 6, nucl 4.5, cyto_nucl 3, cyto_mito 3, mito_plas 3
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v2447150.1 |
|