Miyakogusa Predicted Gene

Lj2g3v2365820.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JHJ0_SOYBN 401 84.9 87.5 (tr|I1JHJ0) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT2G30260.1 323 66.4 80.4 | Symbols: U2B'' | U2 small nuclear ribonucleoprotein B | chr2:12905557-12907434 REVERSE LENGTH=232
Medicago Medtr5g074430.1 398 83.7 86.7 | U1 small nuclear ribonucleoprotein | HC | chr5:31637698-31631234 | 20130731
Soybean Glyma02g39890.1 401 84.9 87.5  
LJGI gnl|LJGI|TC78871 565 100.0 100.0 similar to UniRef100_A7NY57 Cluster: Chromosome chr6 scaffold_3, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_3, whole genome shotgun sequence - Vitis vinifera (Grape), partial (59%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v2365820.1 length: 231 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 4.2e-14 159-218
HMMSmart SM00360 RNA 6e-12 11-85
158-227
ProfileScan PS50102 RRM 13.533 10-89
157-231
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 1.1e-22 7-92
149-230
IPR024888 U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B''
Biological Process GO:0000398 mRNA splicing, via spliceosome    
Molecular Function GO:0017069 snRNA binding    
HMMPanther PTHR10501 U1 9.4e-122 1-231
no_ID  
Coil coil coiled-coil NA 104-125
HMMPanther PTHR10501:SF0 SMALL 9.4e-122 1-231
HMMPfam PF13893 RRM_5 6.2e-11 30-87
Seg seg seg NA 104-121
superfamily SSF54928 RNA-binding 3.6e-24 7-231
Wolf-PSORT
Lj2g3v2365820.1	nucl 8, cyto 4, cysk_nucl 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v2365820.1