Miyakogusa Predicted Gene

Lj2g3v2266440.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr2

Full length sequence(43247325 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G7JZH6_MEDTR 538 63.8 72.3 (tr|G7JZH6) ATP-dependent Clp protease ATP-binding subunit clpL OS=Medicago truncatula GN=MTR_5g071060 PE=4 SV=1

TAIR_pep AT1G07200.2 351 44.2 58.8 | Symbols: | Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein | chr1:2209033-2212316 REVERSE LENGTH=979

Medicago Medtr5g071060.1 538 63.8 72.3 | double Clp-N motif P-loop nucleoside triphosphate hydrolase superfamily protein | HC | chr5:30105997-30111708 | 20130731

Soybean Glyma18g06990.1 476 55.8 66.1

LJGI gnl|LJGI|TC72412 892 100.0 100.0 similar to UniRef100_A7NYE4 Cluster: Chromosome chr6 scaffold_3, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_3, whole genome shotgun sequence - Vitis vinifera (Grape), partial (13%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj2g3v2266440.1 length: 472 aa.

IPR023150 Double Clp-N motif

method AccNumber shortName E-value location

Gene3D G3DSA:1.10.1780.10 no description 6.5e-09 11-117

no_ID

HMMPanther PTHR11638 ATP-DEPENDENT 2.4e-144 1-426

HMMPanther PTHR11638:SF68 GLR3409 2.4e-144 1-426

Seg seg seg NA 16-30
289-307

superfamily SSF81923 Double 1.7e-06 10-122

Wolf-PSORT

Lj2g3v2266440.1 chlo 7, nucl 3, cyto 3, cyto_nucl 3

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj2g3v2266440.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G7JZH6_MEDTR	538	63.8	72.3	(tr\|G7JZH6) ATP-dependent Clp protease ATP-binding subunit clpL OS=Medicago truncatula GN=MTR_5g071060 PE=4 SV=1
TAIR_pep	AT1G07200.2	351	44.2	58.8	\| Symbols: \| Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein \| chr1:2209033-2212316 REVERSE LENGTH=979
Medicago	Medtr5g071060.1	538	63.8	72.3	\| double Clp-N motif P-loop nucleoside triphosphate hydrolase superfamily protein \| HC \| chr5:30105997-30111708 \| 20130731
Soybean	Glyma18g06990.1	476	55.8	66.1
LJGI	gnl\|LJGI\|TC72412	892	100.0	100.0	similar to UniRef100_A7NYE4 Cluster: Chromosome chr6 scaffold_3, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr6 scaffold_3, whole genome shotgun sequence - Vitis vinifera (Grape), partial (13%)

IPR023150	Double Clp-N motif
Lj2g3v2266440.1				length: 472 aa.
method	AccNumber	shortName	E-value	location
Gene3D	G3DSA:1.10.1780.10	no description	6.5e-09	11-117
no_ID
HMMPanther	PTHR11638	ATP-DEPENDENT	2.4e-144	1-426
HMMPanther	PTHR11638:SF68	GLR3409	2.4e-144	1-426
Seg	seg	seg	NA	16-30 289-307
superfamily	SSF81923	Double	1.7e-06	10-122