Miyakogusa Predicted Gene

Lj2g3v2246170.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JHC2_SOYBN 533 64.3 70.4 (tr|I1JHC2) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT3G47120.1 280 73.6 82.6 | Symbols: | RNA recognition motif (RRM)-containing protein | chr3:17351334-17352769 REVERSE LENGTH=352
Medicago Medtr5g070100.1 474 65.3 72.6 | RNA recognition motif (RRM) containing protein | HC | chr5:29707444-29702897 | 20130731
Soybean Glyma02g39100.1 534 67.9 74.8  
LJGI gnl|LJGI|FS336599 991 100.0 100.0 similar to UniRef100_A7NYH5 Cluster: Chromosome chr6 scaffold_3, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_3, whole genome shotgun sequence - Vitis vinifera (Grape), partial (38%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v2246170.1 length: 395 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 3.8e-19 38-108
HMMSmart SM00360 RNA 8.5e-24 37-110
ProfileScan PS50102 RRM 18.547 36-114
IPR000571 Zinc finger, CCCH-type
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
Gene3D G3DSA:4.10.1000.10 no description 9.8e-05 135-157
HMMPfam PF00642 zf-CCCH 2.8e-06 135-155
HMMSmart SM00356 zinc 1.7e-05 132-156
ProfileScan PS50103 ZF_C3H1 15.713 130-157
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 3.4e-22 34-121
no_ID  
HMMPanther PTHR23139 RNA-BINDING 1.8e-55 1-379
Seg seg seg NA 113-127
240-253
264-277
superfamily SSF54928 RNA-binding 5.8e-25 8-111
superfamily SSF90229 CCCH 3.1e-06 128-156
Wolf-PSORT
Lj2g3v2246170.1	nucl 10, chlo 2, cyto 1, plas 1, chlo_mito 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v2246170.1