Miyakogusa Predicted Gene

Lj2g3v2147100.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr2

Full length sequence(43247325 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I3SE46_LOTJA 534 89.4 90.4 (tr|I3SE46) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1

TAIR_pep AT5G65670.1 291 50.0 64.9 | Symbols: IAA9 | indole-3-acetic acid inducible 9 | chr5:26254463-26256134 FORWARD LENGTH=338

Medicago Medtr5g067350.1 427 68.1 76.3 | auxin response factor | HC | chr5:28450190-28454050 | 20130731

Soybean Glyma14g36390.1 465 67.9 75.9

LJGI gnl|LJGI|TC59033 1919 99.8 99.8 similar to UniRef100_Q8RVH8 Cluster: Aux/IAA protein; n=1; Populus tremula x Populus tremuloides|Rep: Aux/IAA protein - Populus tremula x Populus tremuloides, partial (75%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj2g3v2147100.1 length: 339 aa.

IPR003311 AUX/IAA protein

method AccNumber shortName E-value location

Cellular Component GO:0005634 nucleus

Biological Process GO:0006355 regulation of transcription, DNA-dependent

HMMPfam PF02309 AUX_IAA 1.4e-73 74-331

IPR011525 Aux/IAA-ARF-dimerisation

Molecular Function GO:0046983 protein dimerization activity

ProfileScan PS50962 IAA_ARF 26.064 237-339

no_ID

HMMPanther PTHR31734 FAMILY 2.6e-92 38-327

Seg seg seg NA 51-60
189-202

superfamily SSF54277 CAD 4.3e-19 224-337

Wolf-PSORT

Lj2g3v2147100.1 chlo 5, nucl 5, cyto 3, chlo_mito 3

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj2g3v2147100.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I3SE46_LOTJA	534	89.4	90.4	(tr\|I3SE46) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep	AT5G65670.1	291	50.0	64.9	\| Symbols: IAA9 \| indole-3-acetic acid inducible 9 \| chr5:26254463-26256134 FORWARD LENGTH=338
Medicago	Medtr5g067350.1	427	68.1	76.3	\| auxin response factor \| HC \| chr5:28450190-28454050 \| 20130731
Soybean	Glyma14g36390.1	465	67.9	75.9
LJGI	gnl\|LJGI\|TC59033	1919	99.8	99.8	similar to UniRef100_Q8RVH8 Cluster: Aux/IAA protein; n=1; Populus tremula x Populus tremuloides\|Rep: Aux/IAA protein - Populus tremula x Populus tremuloides, partial (75%)

IPR003311	AUX/IAA protein
Lj2g3v2147100.1				length: 339 aa.
method	AccNumber	shortName	E-value	location
Cellular Component	GO:0005634	nucleus
Biological Process	GO:0006355	regulation of transcription, DNA-dependent
HMMPfam	PF02309	AUX_IAA	1.4e-73	74-331
IPR011525	Aux/IAA-ARF-dimerisation
Molecular Function	GO:0046983	protein dimerization activity
ProfileScan	PS50962	IAA_ARF	26.064	237-339
no_ID
HMMPanther	PTHR31734	FAMILY	2.6e-92	38-327
Seg	seg	seg	NA	51-60 189-202
superfamily	SSF54277	CAD	4.3e-19	224-337