Miyakogusa Predicted Gene
- Lj2g3v2125400.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7JSP9_MEDTR |
337 |
92.5 |
97.5 |
(tr|G7JSP9) E3 ubiquitin-protein ligase synoviolin OS=Medicago truncatula GN=MTR_4g077710 PE=4 SV=1 |
| TAIR_pep |
AT3G16090.1 |
321 |
88.1 |
97.5 |
| Symbols: | RING/U-box superfamily protein | chr3:5456513-5458694 FORWARD LENGTH=492 |
| Medicago |
Medtr5g007710.1 |
329 |
93.1 |
98.1 |
| ubiquitin-protein ligase synoviolin | HC | chr5:1471216-1474618 | 20130731 |
| Soybean |
Glyma11g01330.3 |
337 |
96.9 |
99.4 |
|
| LJGI |
gnl|LJGI|TC80467 |
543 |
99.6 |
99.6 |
similar to UniRef100_A7PBD1 Cluster: Chromosome chr16 scaffold_10, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr16 scaffold_10, whole genome shotgun sequence - Vitis vinifera (Grape), partial (21%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v2125400.1 |
length: 160 aa. |
| IPR001841 |
Zinc finger, RING-type |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| Molecular Function |
GO:0008270 |
zinc ion binding |
|
|
| HMMPfam |
PF13639 |
zf-RING_2 |
7.6e-13 |
112-152 |
| HMMSmart |
SM00184 |
Ring |
0.00076 |
113-150 |
| ProfileScan |
PS50089 |
ZF_RING_2 |
12.622 |
113-151 |
| IPR013083 |
Zinc finger, RING/FYVE/PHD-type |
| Gene3D |
G3DSA:3.30.40.10 |
no description |
3.9e-16 |
101-154 |
| no_ID |
|
| HMMPanther |
PTHR12477 |
SYNOVIOLIN-RELATED |
4.6e-120 |
1-159 |
| HMMPanther |
PTHR12477:SF10 |
SYNOVIOLIN-RELATED |
4.6e-120 |
1-159 |
| superfamily |
SSF57850 |
RING/U-box |
4.3e-22 |
87-157 |
- Wolf-PSORT
Lj2g3v2125400.1 chlo 5, extr 5, nucl 1, cyto 1, vacu 1, E.R. 1, cyto_nucl 1, E.R._vacu 1, cyto_E.R. 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v2125400.1 |
|