Miyakogusa Predicted Gene

Lj2g3v2102980.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7KKP9_MEDTR 519 71.1 87.0 (tr|G7KKP9) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_6g078160 PE=4 SV=1
TAIR_pep AT1G12620.1 295 41.3 63.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:4294883-4296748 REVERSE LENGTH=621
Medicago Medtr6g079240.1 528 72.0 87.0 | pentatricopeptide (PPR) repeat protein | HC | chr6:29881712-29885144 | 20130731
Soybean Glyma09g30530.1 515 71.0 85.5  
LJGI gnl|LJGI|GO030841 575 88.8 88.8 weakly similar to UniRef100_A7R617 Cluster: Chromosome undetermined scaffold_1129, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_1129, whole genome shotgun sequence - Vitis vinifera (Grape), partial (13%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v2102980.2 length: 346 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF12854 PPR_1 2.5e-12 2-25
238-268
HMMPfam PF13041 PPR_2 3.9e-12 33-81
102-151
174-221
285-324
HMMTigr TIGR00756 PPR: 5.2e-05 1-34
35-69
70-104
105-139
141-174
175-209
210-244
245-278
281-314
315-345
ProfileScan PS51375 PPR 10.720 1-32
33-67
68-102
103-137
138-172
173-207
208-242
243-277
278-312
313-346
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 0.00025 205-341
no_ID  
HMMPanther PTHR24015 FAMILY 5.8e-131 1-345
HMMPanther PTHR24015:SF0 SUBFAMILY 5.8e-131 1-345
superfamily SSF48452 TPR-like 0.0039 243-342
138-235
Wolf-PSORT
Lj2g3v2102980.2	cyto 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v2102980.2