Miyakogusa Predicted Gene

Lj2g3v2102980.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7IND7_MEDTR 266 66.0 83.5 (tr|G7IND7) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_2g035630 PE=4 SV=1
TAIR_pep AT1G62590.1 167 43.9 64.7 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23177294-23179198 REVERSE LENGTH=634
Medicago Medtr6g079210.1 273 68.4 84.0 | pentatricopeptide (PPR) repeat protein | HC | chr6:29865926-29867095 | 20130731
Soybean Glyma16g27600.1 254 64.2 80.2  
LJGI gnl|LJGI|GO037297 264 84.2 84.2 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14 scaffold_54, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_54, whole genome shotgun sequence - Vitis vinifera (Grape), partial (18%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v2102980.1 length: 207 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF12854 PPR_1 2.3e-09 88-119
HMMPfam PF13041 PPR_2 4.1e-18 21-69
126-175
HMMTigr TIGR00756 PPR: 3.7e-05 24-58
59-93
94-128
129-163
165-187
ProfileScan PS51375 PPR 8.013 22-56
57-91
92-126
127-161
162-192
no_ID  
HMMPanther PTHR24015 FAMILY 3.1e-62 1-187
HMMPanther PTHR24015:SF0 SUBFAMILY 3.1e-62 1-187
Wolf-PSORT
Lj2g3v2102980.1	nucl 3.5, cyto_nucl 3.5, chlo 3, cyto 2.5, extr 2, chlo_mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v2102980.1