Miyakogusa Predicted Gene

Lj2g3v2089800.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JAF9_SOYBN 772 64.4 71.7 (tr|I1JAF9) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G21100.2 366 39.8 55.9 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:7399162-7401870 FORWARD LENGTH=602
Medicago Medtr5g008900.1 771 63.4 70.9 | zinc finger CCCH domain protein | HC | chr5:1988974-1993972 | 20130731
Soybean Glyma01g43700.1 772 64.4 71.7  
LJGI gnl|LJGI|TC78977 1106 99.5 99.5 similar to UniRef100_A7Q1Y9 Cluster: Chromosome chr13 scaffold_45, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr13 scaffold_45, whole genome shotgun sequence - Vitis vinifera (Grape), partial (5%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v2089800.1 length: 657 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 1.4e-07 364-414
HMMSmart SM00360 RNA 4.8e-09 352-422
ProfileScan PS50102 RRM 10.292 351-427
IPR000571 Zinc finger, CCCH-type
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF00642 zf-CCCH 1.7e-05 223-244
HMMSmart SM00356 zinc 0.00066 221-245
ProfileScan PS50103 ZF_C3H1 13.807 219-246
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 7.4e-10 362-432
no_ID  
Coil coil coiled-coil NA 478-506
HMMPanther PTHR24009 FAMILY 2.2e-174 3-648
HMMPanther PTHR24009:SF0 SUBFAMILY 2.2e-174 3-648
Seg seg seg NA 206-222
435-441
483-496
superfamily SSF54928 RNA-binding 3.4e-12 335-440
Wolf-PSORT
Lj2g3v2089800.1	nucl 12, cyto 1, cysk 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v2089800.1