Miyakogusa Predicted Gene

Lj2g3v2089550.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1NH84_SOYBN 503 79.1 87.5 (tr|I1NH84) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G71840.1 429 65.5 81.3 | Symbols: | transducin family protein / WD-40 repeat family protein | chr1:27022424-27024380 FORWARD LENGTH=407
Medicago Medtr1g097140.1 428 68.3 78.3 | vegetative incompatibility HET-E-like protein | HC | chr1:43824050-43816450 | 20130731
Soybean Glyma20g31330.3 503 79.1 87.5  
LJGI gnl|LJGI|TC60154 1808 100.0 100.0 similar to UniRef100_A7QLT1 Cluster: Chromosome chr18 scaffold_121, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_121, whole genome shotgun sequence - Vitis vinifera (Grape), partial (86%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v2089550.2 length: 334 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 4.4e-06 56-88
102-135
139-176
186-218
234-261
269-305
HMMSmart SM00320 WD40 1.8e-05 53-93
96-135
137-176
179-218
221-263
266-305
ProfileScan PS50082 WD_REPEATS_2 12.046 103-135
144-185
186-227
273-314
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 1.5e-67 60-327
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 45.849 60-314
superfamily SSF50978 WD40 2.4e-65 10-326
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 163-177
292-306
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 4.4e-06 122-136
163-177
205-219
no_ID  
HMMPanther PTHR19857 FAMILY 1.6e-157 11-334
HMMPanther PTHR19857:SF16 TRANSDUCIN 1.6e-157 11-334
Seg seg seg NA 3-26
Wolf-PSORT
Lj2g3v2089550.2	cyto 8, nucl 3, cysk 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v2089550.2