Miyakogusa Predicted Gene

Lj2g3v2088070.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL D7UPM8_LOTJA 624 94.2 94.2 (tr|D7UPM8) WD40 repeat nucleoporin similar to SEH1 OS=Lotus japonicus GN=Nena PE=2 SV=1
TAIR_pep AT1G64350.1 437 64.5 78.4 | Symbols: SEH1H | Transducin/WD40 repeat-like superfamily protein | chr1:23881582-23883073 FORWARD LENGTH=326
Medicago Medtr6g072020.1 543 80.5 85.4 | nucleoporin seh1-like protein | HC | chr6:26695311-26691594 | 20130731
Soybean Glyma11g02070.1 570 85.3 89.6  
LJGI gnl|LJGI|TC58856 2748 99.6 99.6 similar to UniRef100_A7QNA0 Cluster: Chromosome chr2 scaffold_132, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr2 scaffold_132, whole genome shotgun sequence - Vitis vinifera (Grape), partial (98%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v2088070.1 length: 326 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 2.4999999999999994E-6 13-37
273-308
HMMSmart SM00320 WD40 3.3999997243771716E-9 1-37
44-87
97-138
213-258
270-309
ProfileScan PS50082 WD_REPEATS_2 0.0 277-309
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10G3DSA:2.130.10.10 T[11-310] 2.7999999997278025E-22  
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 0.0 277-318
superfamily SSF50978 WD40_like 1.29999924468179E-25 12-309
no_ID  
HMMPanther PTHR11024 PTHR11024 0.0 1-324
HMMPanther PTHR11024:SF1 PTHR11024:SF1 0.0 1-324
Wolf-PSORT
Lj2g3v2088070.1	cyto 9, nucl 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v2088070.1