Miyakogusa Predicted Gene
- Lj2g3v2003110.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
F6HUI7_VITVI |
557 |
86.7 |
93.4 |
(tr|F6HUI7) Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g04610 PE=4 SV=1 |
| TAIR_pep |
AT1G63000.1 |
524 |
85.2 |
94.4 |
| Symbols: NRS/ER, UER1 | nucleotide-rhamnose synthase/epimerase-reductase | chr1:23342510-23343859 FORWARD LENGTH=301 |
| Medicago |
Medtr4g102550.1 |
526 |
83.7 |
91.4 |
| 3,5-epimerase/4-reductase | HC | chr4:42518893-42521173 | 20130731 |
| Soybean |
Glyma17g14170.1 |
535 |
85.7 |
90.0 |
|
| LJGI |
gnl|LJGI|TC66306 |
1802 |
100.0 |
100.0 |
homologue to UniRef100_A7QKD6 Cluster: Chromosome chr2 scaffold_112, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr2 scaffold_112, whole genome shotgun sequence - Vitis vinifera (Grape), partial (94%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v2003110.1 |
length: 301 aa. |
| IPR005913 |
dTDP-4-dehydrorhamnose reductase |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0008831 |
dTDP-4-dehydrorhamnose reductase activity |
|
|
| Biological Process |
GO:0045226 |
extracellular polysaccharide biosynthetic process |
|
|
| HMMPfam |
PF04321 |
RmlD_sub_bind |
4.6e-14 |
16-190 |
| IPR016040 |
NAD(P)-binding domain |
| Gene3D |
G3DSA:3.40.50.720 |
no description |
1.1e-30 |
11-242 |
| no_ID |
|
| HMMPanther |
PTHR10366 |
NAD |
2.9e-185 |
10-294 |
| HMMPanther |
PTHR10366:SF111CHLOROPLAST |
STEM-LOOP-BINDING |
2.9e-185 |
10-294 |
| superfamily |
SSF51735 |
NAD(P)-binding |
1.7e-36 |
8-292 |
- Wolf-PSORT
Lj2g3v2003110.1 cysk 10, cyto 2, extr 1, golg 1, cyto_nucl 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v2003110.1 |
|