Miyakogusa Predicted Gene
- Lj2g3v2002610.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7KG67_MEDTR |
884 |
81.2 |
89.4 |
(tr|G7KG67) CPD photolyase OS=Medicago truncatula GN=MTR_5g011780 PE=4 SV=1 |
| TAIR_pep |
AT1G12370.2 |
745 |
71.6 |
84.3 |
| Symbols: PHR1, UVR2 | photolyase 1 | chr1:4206500-4208842 REVERSE LENGTH=496 |
| Medicago |
Medtr5g011780.1 |
895 |
84.1 |
92.6 |
| CPD photolyase | HC | chr5:3437049-3440858 | 20130731 |
| Soybean |
Glyma11g03220.1 |
865 |
83.0 |
89.6 |
|
| LJGI |
gnl|LJGI|BW630454 |
886 |
100.0 |
100.0 |
similar to UniRef100_Q9AVI6 Cluster: CPD photolyase; n=1; Cucumis sativus|Rep: CPD photolyase - Cucumis sativus (Cucumber), partial (24%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v2002610.1 |
length: 496 aa. |
| IPR005101 |
DNA photolyase, FAD-binding/Cryptochrome, C-terminal |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003913 |
DNA photolyase activity |
|
|
| Biological Process |
GO:0006281 |
DNA repair |
|
|
| HMMPfam |
PF03441 |
FAD_binding_7 |
4.8e-31 |
236-464 |
| superfamily |
SSF48173 |
Cryptochrome/photolyase |
2.4e-61 |
224-474 |
| IPR006050 |
DNA photolyase, N-terminal |
| HMMPfam |
PF00875 |
DNA_photolyase |
5.2e-28 |
32-193 |
| ProfileScan |
PS51645 |
PHR_CRY_ALPHA_BETA |
28.597 |
30-163 |
| superfamily |
SSF52425 |
Cryptochrome/photolyase, |
7.2e-41 |
30-233 |
| IPR008148 |
DNA photolyase, class 2 |
| Molecular Function |
GO:0003904 |
deoxyribodipyrimidine photo-lyase activity |
|
|
| Biological Process |
GO:0006281 |
DNA repair |
|
|
| HMMPanther |
PTHR10211 |
DEOXYRIBODIPYRIMIDINE |
1.3e-172 |
7-483 |
| HMMTigr |
TIGR00591 |
phr2: |
6.1e-207 |
8-466 |
| PatternScan |
PS01083 |
DNA_PHOTOLYASES_2_1 |
NA |
304-318 |
| PatternScan |
PS01084 |
DNA_PHOTOLYASES_2_2 |
NA |
431-450 |
| IPR014729 |
Rossmann-like alpha/beta/alpha sandwich fold |
| Gene3D |
G3DSA:3.40.50.620 |
no description |
3e-19 |
31-156 |
| no_ID |
|
| Gene3D |
G3DSA:1.10.579.10 |
no description |
3.9e-18 |
313-484 |
| Gene3D |
G3DSA:1.25.40.80 |
no description |
1.1e-25 |
179-312 |
| HMMPanther |
PTHR10211:SF0 |
DEOXYRIBODIPYRIMIDINE |
1.3e-172 |
7-483 |
- Wolf-PSORT
Lj2g3v2002610.1 chlo 7, nucl 4, mito 2.5, cyto_mito 2, cysk_nucl 2, nucl_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v2002610.1 |
|