Miyakogusa Predicted Gene

Lj2g3v2001840.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7JW38_MEDTR 683 73.0 83.2 (tr|G7JW38) Putative uncharacterized protein OS=Medicago truncatula GN=MTR_5g012660 PE=4 SV=1
TAIR_pep AT5G47460.1 473 47.9 66.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:19252463-19254193 REVERSE LENGTH=576
Medicago Medtr5g012660.1 683 73.0 83.2 | PPR containing plant-like protein | HC | chr5:3861054-3862731 | 20130731
Soybean Glyma11g03620.1 649 71.9 83.2  
LJGI gnl|LJGI|BW623714 940 100.0 100.0 weakly similar to UniRef100_A7R3M9 Cluster: Chromosome chr2 scaffold_541, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr2 scaffold_541, whole genome shotgun sequence - Vitis vinifera (Grape), partial (22%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v2001840.1 length: 521 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.0085 211-239
240-265
375-398
HMMPfam PF12854 PPR_1 8.7e-07 267-297
HMMPfam PF13041 PPR_2 3.2e-08 135-184
299-346
401-449
HMMTigr TIGR00756 PPR: 3e-05 138-168
211-239
271-296
303-336
403-437
ProfileScan PS51375 PPR 6.040 136-170
207-241
172-206
300-334
269-299
401-431
370-400
437-468
474-508
no_ID  
HMMPanther PTHR24015 FAMILY 1.6e-123 104-521
HMMPanther PTHR24015:SF169PENTATRICOPEPTIDE (PPR) 1.6e-123 104-521
Seg seg seg NA 179-191
Wolf-PSORT
Lj2g3v2001840.1	chlo 5, pero 5, mito 3, cyto_pero 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v2001840.1