Miyakogusa Predicted Gene
- Lj2g3v1988870.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
M5WNW1_PRUPE |
186 |
98.9 |
100.0 |
(tr|M5WNW1) Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013350mg PE=4 SV=1 |
| TAIR_pep |
AT3G10950.1 |
174 |
93.4 |
97.8 |
| Symbols: | Zinc-binding ribosomal protein family protein | chr3:3423893-3424566 FORWARD LENGTH=92 |
| Medicago |
Medtr0199s0040.1 |
185 |
98.9 |
98.9 |
| 60S ribosomal protein L37a-2 | LC | scaffold0199:12346-16101 | 20130731 |
| Soybean |
Glyma11g04190.1 |
184 |
100.0 |
100.0 |
|
| LJGI |
gnl|LJGI|TC70043 |
559 |
100.0 |
100.0 |
homologue to UniRef100_Q9ZRS8 Cluster: 60S ribosomal protein L37a; n=2; Pinaceae|Rep: 60S ribosomal protein L37a - Pseudotsuga menziesii (Douglas-fir), complete |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v1988870.1 |
length: 92 aa. |
| IPR002674 |
Ribosomal protein L37ae |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003735 |
structural constituent of ribosome |
|
|
| Cellular Component |
GO:0005622 |
intracellular |
|
|
| Cellular Component |
GO:0005840 |
ribosome |
|
|
| Biological Process |
GO:0006412 |
translation |
|
|
| HAMAP |
MF_00327 |
Ribosomal_L37Ae |
19.008 |
4-72 |
| HMMPfam |
PF01780 |
Ribosomal_L37ae |
4.5e-38 |
2-91 |
| HMMTigr |
TIGR00280 |
L37a: |
6.9e-34 |
1-91 |
| IPR011331 |
Ribosomal protein L37ae/L37e |
| Molecular Function |
GO:0003735 |
structural constituent of ribosome |
|
|
| Cellular Component |
GO:0005622 |
intracellular |
|
|
| Cellular Component |
GO:0005840 |
ribosome |
|
|
| Biological Process |
GO:0006412 |
translation |
|
|
| Gene3D |
G3DSA:2.20.25.30 |
no description |
1.1e-41 |
10-91 |
| IPR011332 |
Ribosomal protein, zinc-binding domain |
| Molecular Function |
GO:0003735 |
structural constituent of ribosome |
|
|
| Cellular Component |
GO:0005622 |
intracellular |
|
|
| Cellular Component |
GO:0005840 |
ribosome |
|
|
| Biological Process |
GO:0006412 |
translation |
|
|
| superfamily |
SSF57829 |
Zn-binding |
1.3e-30 |
10-82 |
| no_ID |
|
| HMMPanther |
PTHR11517 |
60S |
2.6e-64 |
2-91 |
- Wolf-PSORT
Lj2g3v1988870.1 chlo 7, cyto 4, nucl 2, cyto_pero 2, cyto_E.R. 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v1988870.1 |
|