Miyakogusa Predicted Gene

Lj2g3v1987530.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1J9N5_SOYBN 1380 95.7 96.7 (tr|I1J9N5) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G47010.1 1218 84.4 90.1 | Symbols: UPF1, LBA1, ATUPF1 | RNA helicase, putative | chr5:19072009-19078856 FORWARD LENGTH=1254
Medicago Medtr5g013820.1 1363 94.7 96.4 | regulator of nonsense transcripts protein | HC | chr5:4548278-4534982 | 20130731
Soybean Glyma01g41110.1 1380 95.7 96.7  
LJGI gnl|LJGI|BP063495 765 99.7 99.7 similar to UniRef100_A7PCF0 Cluster: Chromosome chr2 scaffold_11, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr2 scaffold_11, whole genome shotgun sequence - Vitis vinifera (Grape), partial (9%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v1987530.1 length: 694 aa.
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
method AccNumber shortName E-value location
ProfileScan PS51192 HELICASE_ATP_BIND_1 10.226 489-621
IPR018999 RNA helicase UPF1, UPF2-interacting domain
Biological Process GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay    
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005737 cytoplasm    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF09416 UPF1_Zn_bind 1.3e-72 130-283
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 6.3e-44 353-681
no_ID  
Gene3D G3DSA:3.40.50.300 no description 4.6e-44 640-683
HMMPanther PTHR10887 DNA2/NAM7 0 96-694
HMMPanther PTHR10887:SF26 REGULATOR 0 96-694
HMMPfam PF13086 AAA_11 2.5e-58 480-684
Seg seg seg NA 82-96
Wolf-PSORT
Lj2g3v1987530.1	cyto 8, nucl 4, cyto_pero 4, cyto_E.R. 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v1987530.1